Closed Mkddb closed 4 years ago
Thanks for letting me know about this. Can you post the contents of the file t/test2.out in your SVanalyzer directory?
Yes,
The content in file t/test2.out says.. Can't open t//nucmer.prefix.delta, No such file or directory
While, there is another file as "nucmer.prefix.err" which has the following content.. nucmer: error while loading shared libraries: libumdmummer.so.0: cannot open shared object file: No such file or directory
am i missing some paths or some files itself ?
It looks to me like there's a problem with your nucmer installation, then. Solution is to find that shared library file. Until then, all tools in SVanalyzer should work except for SVwiden, which uses nucmer to find widened coordinates of variants.
Thanks nhansen.. For creating such a useful tool.
I am getting this error during installation in the building step. when i enter this command.. ./Build test
i am receiving this message.. please check if this is an error. if it can be skipped or fixed.
t/1_load.t .. ok
t/2_call.t .. 1/16
Failed test 'blib/script/SVwiden vartype'
at t/2_call.t line 47.
''
doesn't match '(?^:REPTYPE=DUP)'
Failed test 'blib/script/SVwiden widensmall'
at t/2_call.t line 49.
''
doesn't match '(?^:REFWIDENED=1:842056-842090)'
t/2_call.t .. 14/16 # Looks like you failed 2 tests of 16. t/2_call.t .. Dubious, test returned 2 (wstat 512, 0x200) Failed 2/16 subtests
Test Summary Report
t/2_call.t (Wstat: 512 Tests: 16 Failed: 2) Failed tests: 5-6 Non-zero exit status: 2 Files=2, Tests=38, 6 wallclock secs ( 0.04 usr 0.01 sys + 4.84 cusr 0.70 csys = 5.59 CPU) Result: FAIL Failed 1/2 test programs. 2/38 subtests failed.
Thanks in advance.