The following error is produced by line 56 in modtest_ic:
cannot coerce class ""qr"" to a data.frame
The line in question attempts to change an MArrayLM object (produced by limma::eBayes to a data.frame via biotmle@modtestOut <- as.data.frame(fit).
Importantly, it is unclear what utility is gained by even saving the objected produced by limma::eBayes, as all inferential information is stored in the output of limma::topTable
nhejazi
commented
7 years ago
The following error is produced by line 56 in
modtest_ic:cannot coerce class ""qr"" to a data.frameThe line in question attempts to change an
MArrayLMobject (produced bylimma::eBayesto adata.frameviabiotmle@modtestOut <- as.data.frame(fit).Importantly, it is unclear what utility is gained by even saving the objected produced by
limma::eBayes, as all inferential information is stored in the output oflimma::topTable