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nhejazi / biotmle

:package: :microscope: R/biotmle: Targeted Learning with Moderated Statistics for Biomarker Discovery
https://code.nimahejazi.org/biotmle/
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succinctly convey analysis results #38

Closed nhejazi closed 6 years ago

nhejazi commented 6 years ago

The Bioconductor developer guidelines recommend implementing a method for show (in this case show.biotmle) to better convey the information presented by the output object. Currently, biotmle objects are sub-classed from the standard SummarizedExperiment class, so the standard call to print/show only displays the relevant SummarizedExperiment information, while the analysis results are hidden (though a tutorial on how to extract them is treated in the vignette). This should be corrected ASAP.

nhejazi commented 6 years ago

After careful consideration, it does not appear that the class bioTMLE exposed in this package would benefit from the inclusion of a custom method for show. This may require re-opening in the future if the lack of a custom show method becomes a concern.