The Bioconductor developer guidelines recommend implementing a method for show (in this case show.methytmle) to better convey the information presented by the output object. Currently, methytmle objects are sub-classed from the standard SummarizedExperiment class, so the standard call to print/show only displays the relevant SummarizedExperiment information, while the analysis results are hidden (though a tutorial on how to extract them is treated in the vignette). This should be corrected ASAP.
nhejazi
commented
6 years ago
The Bioconductor developer guidelines recommend implementing a method for
show(in this caseshow.methytmle) to better convey the information presented by the output object. Currently,methytmleobjects are sub-classed from the standardSummarizedExperimentclass, so the standard call toprint/showonly displays the relevantSummarizedExperimentinformation, while the analysis results are hidden (though a tutorial on how to extract them is treated in the vignette). This should be corrected ASAP.