nhoffman / bioy

Tools for NGS sequence analysis and bacterial classification
GNU General Public License v3.0
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gb2fa coordinate parsing #4

Closed crosenth closed 6 years ago

crosenth commented 10 years ago

To compensate for misannotations in seq coordinates it would be nice to be able to specify a subsequence that should be in the sequence and a padding range to pairwise search against. If the pairwise alignment matches then the sequence would be extended to the new coordinates. Would be most useful for including primer regions in feature coordinates.