Closed dhoogest closed 2 years ago
/cc @nhoffman @crosenth @mwohl - followup issue from our discussion today.
See related https://github.com/nhoffman/dada2-nf/issues/27
See option for introducing barcodcop argument (without changes to barcodecop itself) with https://github.com/nhoffman/dada2-nf/pull/45
Desired behavior is to specify a numeric value (or None) to indicate the downsampling threshold per sample, then to have filtering/denoising steps performed on the downsampled reads. In order to keep conditional logic simple in this pipeline it might be useful to modify barcodecop to handle
None
input for--head
instead of attempting to extend arguments based on the presence of a param here.Needs some discussion prior to addressing.