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nhoffman / dada2-nf

A Nextflow pipeline for processing 16S rRNA sequences using dada2
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uncomment dada_get_unmerged, fix typo in params-ngs16s #48

Closed dhoogest closed 2 years ago

dhoogest commented 2 years ago

closes #47

dhoogest commented 2 years ago

Basically just uncomments the dada_get_unmerged process. I tested this via ./nextflow run main.nf -params-file params-ngs16s.json

...and confirmed the presence of the unmerged_F/R.fasta:

dhoogest@gattaca:~/src/dada2-nf$ head output-single/dada/879-9/unmerged_F.fasta
>f02:72
CGTGCCTAATACATGCAAGTCGAACGGAGATTAAGTAGCTTGCTATTTAATCTTAGTGGCGCACGGGTGAGTAATATATAGCTAATCTGCCCTACACTAGAGGACAACAGTTGGAAACGACTGCTAATACTCTATACTCCTTCTAAGCATAAGCTTAGTCGGGAAAGTTAATAAAATTTGCTTTTTGGTTTCATCTTGAGAGATATGGACGTATAACAACTAAAT
>f31:8
CGTGCTTAACACATGCAAGTCGAACGGAAAGGCCCAAGCTTGCTTGGGTACTCGAGTGGCGAACGGGTGAGTAACACGTGGGTGATCTGCCCTGCACTTCGGGATAAGCCTGGGAAACTGGGTCTAATACCGGATAGGACCACTTCTTGGATGTTGTGGTGGAAAGTTTTTTCGGTGTGGGATGAGCTCGCGGCCTATCAGCTTGTTGGTGGGGTAATGGCCTAC
>f32:4
CAGGCCTAACACATGCAAGTCGAGCGCCCAGCAATGGGAGCGGCAGACGGGTGAGTAACGCGTGGGGATGTACCCAATGGTACGGAATAACCCAGGGAAACTTGGATTAATACCGTATGAGCCCTTCGGGGGAAAGATTTATCGCCATTGGATCAACCCGCGTCGGATTAGCTAGTTGGTGAGGTAAAGGCTCACCAAGGCGACGATCCGTAGCTGGTCTGAGAG
>f34:3
CATGCCTTACACATGCAAGTCGAACGGTAACAGGTCTTCGGATGCTGACGAGTGGCGAACGGGTGAGTAATACATCGGAACGTGCCCGATCGTGGGGGATAACGGAGCGAAAGCTTTGCTAATACCGCATACGATCTACGGATGAAAGCAGGGGACCGCAAGGCCTTGCGCGGACGGAGCGGCCGATGGCAGATTAGGTAGTTGGTGGGATAAAAGCTTACCAAG