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nhoffman / ya16sdb

A curated subset of 16S rRNA sequences from NCBI
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review dependencies in venv vs singularity images #27

Open nhoffman opened 5 years ago

nhoffman commented 5 years ago

eg, can we run all scripts requiring sqlalchemy from taxtastic image

crosenth commented 5 years ago

Using Singularity to run esearch - https://github.com/nhoffman/ya16sdb/commit/dea28198bcaaf2a3fceef4afca9b64fc3ff7ba6a