search

nhoffman / ya16sdb

A curated subset of 16S rRNA sequences from NCBI
2 stars 3 forks source link

Some accession feature tables returning duplicate feature coordinates #30

Closed crosenth closed 2 years ago

crosenth commented 5 years ago

screenshot from 2019-02-06 10-24-30

screenshot from 2019-02-06 10-17-50

crosenth commented 5 years ago

https://www.ncbi.nlm.nih.gov/nuccore/MK240093.1 https://www.ncbi.nlm.nih.gov/nuccore/MK240094.1 https://www.ncbi.nlm.nih.gov/nuccore/MK240095.1 https://www.ncbi.nlm.nih.gov/nuccore/MK240096.1

crosenth commented 5 years ago

All these records were submitted by the same researcher. I will add these to the data/ignore.txt file and write to ncbi about these records.

crosenth commented 5 years ago

Four of the submitter's five records appear to have this glitch - https://www.ncbi.nlm.nih.gov/nuccore/?term=Jerry+Mechery

crosenth commented 5 years ago

I have sent an email to NCBI about the issue. In the meantime, I have added the four records to our data/ignore.txt file https://github.com/nhoffman/ya16sdb/commit/b70c123af989427870184e6360acc3a983090c6c