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nhoffman / ya16sdb

A curated subset of 16S rRNA sequences from NCBI
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migrate to ECS #53

Open nhoffman opened 1 year ago

nhoffman commented 1 year ago

We will provide and build a Dockerfile here, host the image on ghcr, but depoy the app to internal infrastructure using a cdk stack configurations maintained elsewhere.

crosenth commented 1 year ago

https://github.com/nhoffman/ya16sdb/tree/053-ecs-stack

crosenth commented 11 months ago

2.5GB of mem got us over the top - https://ya16sdb.dlmp.uw.edu/

crosenth commented 11 months ago

Docker command to test locally: 

docker run \
--env DATA_FILE=s3://ya16sdb-data/filter_details.feather.gz \
--memory 2.5GB \
--publish 8000:8000 \
--volume $HOME/.aws/:/root/.aws/ \
ghcr.io/nhoffman/ya16sdb-app:latest
crosenth commented 11 months ago

I also set gunicorn back to the default --timeout

crosenth commented 10 months ago

PR: https://github.com/nhoffman/ya16sdb/pull/62