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dsb
Normalize CITEseq Data
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fix: logical in ModelNegativeADTnorm.r
#47
maxkarlsson
closed
2 months ago
0
DSB validity for limited ADT features
#46
saimaniharreddy
closed
9 months ago
1
## Advance use error
#45
Sogand65
closed
2 months ago
6
Integrated multiple samples
#44
Aaron-sqw
closed
11 months ago
1
Selecting Cut-Off Value For ADT Expression
#43
codeneeded
closed
11 months ago
2
DSB with high throughput method
#42
ojbednar
closed
1 year ago
1
Empty droplet definition with Mission Bio data
#41
mcortes-lopez
closed
11 months ago
4
choice of graph to use for clustering unclear?
#40
naila53
closed
1 year ago
1
Truncating negative values
#39
erflynn
closed
1 year ago
2
Do Isotype Control Values have to be Subtracted?
#38
codeneeded
closed
1 year ago
2
(denoise.counts=TRUE, use.isotype.control=TRUE) very similar (denoise.counts=FALSE, use.isotype.control=FALSE)
#37
domi84
closed
1 year ago
1
Variation due to library size remains in normalized counts.
#36
Thapeachydude
closed
1 year ago
1
ValueError (ill-defined empirical covariance)
#35
m21camby
opened
2 years ago
2
Should we scale the data?
#34
fredust
closed
2 years ago
3
Fixing error in dsb.R return.stats use case
#33
diegoalexespi
closed
2 years ago
0
return.stats use-case error
#32
diegoalexespi
closed
2 years ago
2
longer object length is not a multiple of shorter object length
#31
dtatarak
closed
2 years ago
3
Question: Workflow using HTOdemux
#30
m3lorra
closed
2 years ago
4
CiteSeqCount on empty droplet whitelist
#29
EspressoKris
closed
2 years ago
11
dsb package environment
#28
jjs847
closed
2 years ago
2
Error in cells$`Gene Expression`
#27
rpauly
closed
3 years ago
5
Error in quantile.default
#26
gt7901b
closed
3 years ago
3
object 'count_prot' not found
#25
johaab
closed
3 years ago
2
Update dsb.r
#24
mdmanurung
closed
3 years ago
0
differential expression analysis: log2FC on negative DSB-normalized values
#23
cyc2145
closed
3 years ago
9
Quantile trimming after dsb normalisation
#22
mdmanurung
closed
3 years ago
2
Filtering cells of multiplexed experiment stained with TotalSeq-A universal panel
#21
mdmanurung
closed
3 years ago
2
Finding the right cutoffs manually
#20
ColeKeenum
closed
3 years ago
8
DSB normalising with artificial (zero) background
#19
jkniffka
closed
3 years ago
1
Log transform DSB-normalised corrected ADT counts
#18
jkniffka
closed
3 years ago
3
DropletUtils::EmptyDrops?
#17
bbimber
closed
3 years ago
4
multiplexing experiments section?
#16
bbimber
closed
3 years ago
1
Adding a tag
#15
Accio
closed
3 years ago
4
Decision tree for deciding whether to set denoise.counts = TRUE
#14
malisas
closed
3 years ago
2
Integrating RNA+DSB using Seurats v4 WNN
#13
danmoore1987
closed
3 years ago
3
batch-effect correction in DSB-normalized data?
#12
massonix
closed
3 years ago
4
Not issue quickstart example plots
#11
MattPM
closed
4 years ago
0
as.matrix conversion: memory issues
#10
Daliya-K
closed
4 years ago
5
range of normalized values
#9
bio-la
closed
4 years ago
5
Using emptyDrops on RNA to define my negative matrix
#8
sorjuela
closed
4 years ago
3
AB isotypes needed?
#7
bio-la
closed
4 years ago
7
Error in quantile.default(x, seq(from = 0, to = 1, length = n)) :
#6
naity
closed
4 years ago
3
cellranger Vs CITE-seq-count
#5
sorjuela
closed
4 years ago
4
Additional normalization?
#4
yksaito
closed
4 years ago
2
fix Bioconductor dependency
#3
igordot
closed
4 years ago
1
isotype controls
#2
igordot
closed
4 years ago
2
Advise without HTODemux
#1
sorjuela
closed
4 years ago
2