Closed NetaFG closed 1 year ago
This is the parallel in in QA: UI https://hedwig2qa.niaid.nih.gov/sessions/U2Vzc2lvbjoyMjU4/samples#N4IgygpgzlCWD2A7AMrKAXWiDmIBcoAagKIBKYAkgPIBy+AjADQiECCyAqsfqAIYyxsiCABMw6XgDNJAMVgAbdBABO+ANoBdZgAdYcxSvVaQUCPIgBjJSIAqAT23QjzU72UWAFuOVZceE7wAttrmAPqIQRAgzABusBAA7vaO+AAMzG4Q+krKUGAe8AmI+OjKAK4QLvDKmDjivEo8JtXoAMI+OQjF/sj86BzaIg0QACLD0c01I7DKlphI+CAj0BYQiCK+IAC+O1tAA=== Pipeline run: https://prefect1.hedwig-workflow-api.niaidqa.net/default/flow-run/4676d77e-9c92-4f4b-9691-be2a0cc23c4d
Re ran this pipeline, without any modifications, in production. File system issue did not occur. There was one mrc file that was not convertable it appears, this is probably not related to the file system.
No issues exist with this in QA. It should be noted that not all files were run, only 7 of the 9, so this is not a like with like comparison.
'mrc file /mnt/ai-fas12/RMLEMHedwigProd/Projects/CC/jkovacs/jkovacs-2023-0602-PCPmsg/Cryo-TEM-2023-0602-FolderTest/MSG/J19_272_class_averages.mrc is not 2 dimensional. Contains 50 Z dims.
This is expected behaviour, if non 2D mrcs are attempted to be run within this pipeline.
The pipreline run: https://prefect1.hedwig-workflow-api.niaidprod.net/default/flow-run/b1c406b5-0883-4940-b300-ef594997e5b5?overview The error message: