Made modifications to upgrade to Prefect2

niaid / image_portal_workflows

Workflows related to project previously referred to as "Hedwig"

BSD 3-Clause "New" or "Revised" License

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Closed mbopfNIH closed 1 year ago

mbopfNIH commented 1 year ago

This is a minimal set of mods to get dm_test running in Prefect2.

mbopfNIH commented 1 year ago

See #237 for a list of changes made. Limitations:

Only works the cases in the dm_test.
"Fatal" errors, like the two in dm_test work okay, but "partial" error scenarios, like when a single file has an issue, will not complete the rest of the files.
The state handlers in utils.py are commented out as Prefect2 no longer uses them. We need a new mechanism to communicate with Seva's API.
test_utils, test_brt, and test_sem do not work.