niaid / image_portal_workflows

Workflows related to project previously referred to as "Hedwig"
BSD 3-Clause "New" or "Revised" License
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GitHub Actions run of pytest has problems #240

Open mbopfNIH opened 1 year ago

mbopfNIH commented 1 year ago
mbopfNIH commented 1 year ago

It appears that the pytest debug output is now being displayed. Need to add install of bioformats2raw to the build.

mbopfNIH commented 1 year ago

Added the bioformats2raw install in main.yml which also requires java to run.

Still need to mark the build as failed when the tests fail, but will wait for Prefect2 as that should make failure detection much easier.