niaid / image_portal_workflows

Workflows related to project previously referred to as "Hedwig"
BSD 3-Clause "New" or "Revised" License
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Lrg 2d rgb pipeline #251

Closed philipmac closed 1 year ago

philipmac commented 1 year ago

Looks pretty good to me. Is it mostly the size of the image driving the RAM usage? Or do you think it's the Zarr conversion (bioformats program)?

input image size - I had to crop something down to get it to run on my machine. Running on HPC seems less of an issue, they have ~1000 Gigs of RAM