niaid / image_portal_workflows

Workflows related to project previously referred to as "Hedwig"
BSD 3-Clause "New" or "Revised" License
5 stars 1 forks source link

update BRT Neuroglancer to new format #338

Closed philipmac closed 1 year ago

philipmac commented 1 year ago

pytools visual_min_max output needs to be massaged to conform to the new metadata format.

Eg see: https://github.com/niaid/image_portal_workflows/blob/f1f6664950a2ffa4d013edc507c56917e1a4f676/docs/source/metadata.yml#L19

blowekamp commented 1 year ago

The "visual_min_max" should be marked deprecated. Please replace with ZarrImage.neuroglancer_shader_parameters