Return OME metadata xml file location along with ng metadata

niaid / image_portal_workflows

Workflows related to project previously referred to as "Hedwig"

BSD 3-Clause "New" or "Revised" License

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Return OME metadata xml file location along with ng metadata #361

Closed annshress closed 1 year ago

annshress commented 1 year ago

Closes #358

Changes

This PR doesn't introduce any:

[x] Binary files
[x] Temporary files, auto-generated files
[x] Secret keys
[x] Local debugging print statements
[x] Unwanted comments (e.g: # Gets user from environment for code os.environ['user'] )

This PR contains valid:

[x] tests

github-actions[bot] commented 1 year ago

Coverage report

The coverage rate went from 64.55% to 63.93% :arrow_down: The branch rate is 46%.

33.33% of new lines are covered.

Diff Coverage details (click to unfold)

### em_workflows/czi/flow.py `27.27%` of new lines are covered (`37.06%` of the complete file). Missing lines: `112`, `113`, `114`, `115`, `116`, `117`, `118`, `119` ### em_workflows/file_path.py `100%` of new lines are covered (`80.91%` of the complete file).