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niaid / image_portal_workflows

Workflows related to project previously referred to as "Hedwig"
BSD 3-Clause "New" or "Revised" License
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bug in mock rechunk func, passing string, not FilePath obj #439

Closed philipmac closed 6 months ago

philipmac commented 6 months ago

File "/gs1/home/hedwig_dev/image_portal_workflows/test/conftest.py", line 96, in _mock_rechunk original_rechunk(zarr_fp, *a, **kw) File "/gs1/home/hedwig_dev/image_portal_workflows/em_workflows/utils/neuroglancer.py", line 13, in rechunk_zarr zarr_fp = Path(f"{file_path.working_dir}/{file_path.base}.zarr") AttributeError: 'str' object has no attribute 'working_dir' ERROR prefect.task_runs:engine.py:2012 Finished in state Failed("Task run encountered an exception AttributeError: 'str' object has no attribute 'working_dir'")