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niaid
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image_portal_workflows
Workflows related to project previously referred to as "Hedwig"
BSD 3-Clause "New" or "Revised" License
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Add more automated tests; HEDWG2-1159
#430
annshress
closed
7 months ago
1
Update `add_asset` calls in all workflows?
#429
annshress
opened
7 months ago
1
Understanding Small 2d conversion; DM conversion intermediate steps failure
#428
annshress
closed
7 months ago
0
Add collection exception task hook; Add associated test;
#427
annshress
closed
7 months ago
1
clean up / rm dead code
#426
philipmac
closed
7 months ago
1
Clean up some redundent code
#425
philipmac
closed
7 months ago
0
Add collection exception task hook; Add associated test;
#424
annshress
closed
7 months ago
1
Refactor post workflow tasks
#423
annshress
closed
7 months ago
1
Small 2D and BRT fixes
#422
annshress
closed
7 months ago
1
Small 2D fix and refactor BRT
#421
annshress
closed
7 months ago
1
Changes on top of fix/brt
#420
annshress
closed
7 months ago
0
Feature/add brt tests
#419
annshress
closed
7 months ago
0
Some *internal* tasks in HPC compute node not being able to use the prefect server's api
#418
annshress
opened
8 months ago
0
BRT pipeline possible refactor: Waiting for all mapped task runs to finish when partially finished tasks could go on with rest of the pipeline
#417
annshress
closed
7 months ago
5
add a new page to docs benchmarking each of the compute intensive steps
#416
philipmac
opened
8 months ago
0
always include ALL primary files paths found in input dir
#415
philipmac
closed
7 months ago
3
catch bad input params to prefect API
#414
philipmac
opened
8 months ago
2
Two 2D pipeline runs failed in Prod - 12/19/2023
#413
NetaFG
closed
8 months ago
1
Upgrade to Prefect2
#412
annshress
closed
8 months ago
1
BRT task: gen_ng_metadata takes long time
#411
annshress
closed
8 months ago
2
Discuss Failing BRT runs
#410
annshress
closed
8 months ago
2
[Working version for Small 2d and BRT] Small 2D and BRT fixes
#409
annshress
closed
7 months ago
2
Prefect 2 testing -Multichannel run failed in DEV after sucessfuly submission of the pipeline
#408
NetaFG
closed
8 months ago
1
Prefect 2 testing -Multichannel run failed in DEV
#407
NetaFG
closed
8 months ago
4
Difference in subflows with and without async calls
#406
annshress
closed
7 months ago
0
One 2D RGB sample file failed the processing of the Irg_2D pipeline in QA on 12/12/2023
#405
NetaFG
closed
8 months ago
5
Automate Prefect to run tests, nightly, on HPC, as another set of workflows
#404
philipmac
closed
7 months ago
1
fix up HPC page slightly
#403
philipmac
closed
8 months ago
1
Fix/rename priv params
#402
philipmac
closed
8 months ago
1
Enable pytools logger during cluster setup
#401
annshress
closed
8 months ago
1
Enable/Disable `pytools` logging
#400
annshress
closed
7 months ago
1
Feature/update docs
#399
philipmac
closed
8 months ago
1
Adding requirements-dev.txt to Dockerfile
#398
philipmac
closed
8 months ago
1
fixes required for docker container
#397
philipmac
closed
8 months ago
0
One of the Mutlichannell pipeline runs in Prod failed on 12/5/2023
#396
NetaFG
closed
8 months ago
1
Update helper script to mandate Prefect_api_key
#395
annshress
closed
6 months ago
1
Feature/update docs
#394
annshress
closed
8 months ago
1
Polish docs
#393
annshress
closed
8 months ago
1
Changes benchmarked inc speed ~1.5hrs -> 5mins
#392
philipmac
closed
8 months ago
1
bioformats2raw still taking v long time on HPC
#391
philipmac
opened
8 months ago
1
Fixes issues with dm test, large 2d test, brt, cleanup, adds workflow name
#390
philipmac
closed
8 months ago
0
Authentication in Prefect server
#389
annshress
closed
8 months ago
1
Housekeeping on GH repo / docs / code
#388
philipmac
opened
8 months ago
0
Consider defing and returning "important" settings for display on GUI
#387
philipmac
opened
9 months ago
0
define API usage to enable prelim Hedwig testing
#386
philipmac
closed
8 months ago
1
Allow in memory zarr rechunk
#385
annshress
closed
9 months ago
0
Add different cluster configs
#384
annshress
closed
9 months ago
0
Refactor dm workflow
#383
annshress
closed
9 months ago
0
Changing bioformats2raw chunk dims from 4K to 512
#382
philipmac
closed
9 months ago
1
Adds subflows to group tasks and speed up czi workflow
#381
annshress
closed
9 months ago
0
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