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niaid
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image_portal_workflows
Workflows related to project previously referred to as "Hedwig"
BSD 3-Clause "New" or "Revised" License
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Increasing test coverage; commented out dead code
#224
mbopfNIH
closed
1 year ago
0
Adding MRC file for test coverage.
#223
mbopfNIH
closed
1 year ago
1
Fixing Flake8 error "W605 invalid escape sequence"
#222
mbopfNIH
closed
1 year ago
0
Adding debug option to prevent removal of workdirs, closes #194
#221
philipmac
closed
1 year ago
0
Increasing test coverage; fixed flake8 issue
#220
mbopfNIH
closed
1 year ago
1
Add neuroglancer zarr asset type
#219
philipmac
closed
1 year ago
0
Added script to manually run test coverage.
#218
mbopfNIH
closed
1 year ago
0
add neuroglancerZarr asset type to callback.
#217
philipmac
closed
1 year ago
1
Fixed in flake8 args
#216
mbopfNIH
closed
1 year ago
0
Fixes for M1 Mac issue
#215
mbopfNIH
closed
1 year ago
2
Fix bioformats2raw issues on M1 Mac
#214
mbopfNIH
closed
1 year ago
1
Updated the Development page of the docs.
#212
mbopfNIH
closed
1 year ago
0
Cleaned up errors in Sphinx docs build
#211
mbopfNIH
closed
1 year ago
0
adding pre-commit to repo
#209
philipmac
closed
1 year ago
0
rms unused test_callback, adds .flake8 file, fixes flake8 errs
#208
philipmac
closed
1 year ago
0
flake8 everything - prep for precommit
#207
philipmac
closed
1 year ago
1
Fixed IMOD path issues and skipped bad dm tests
#206
mbopfNIH
closed
1 year ago
1
flake8 on workflow code, adds __init__.py to test
#205
philipmac
closed
1 year ago
0
add pre-commit
#204
philipmac
closed
1 year ago
0
Zarr format
#203
philipmac
closed
1 year ago
0
Tests and Coverage upon GH Actions
#202
mbopfNIH
closed
1 year ago
0
PERF: Combine newstack commands which apply transforms.
#200
philipmac
closed
1 year ago
0
OME-Zarr in Hedwig
#199
philipmac
closed
1 year ago
0
Get tests working in GitHub Actions
#198
mbopfNIH
closed
1 year ago
1
revert QA to prev release on May 2nd 2023
#197
philipmac
closed
1 year ago
1
Added pytest coverage including documentation
#196
mbopfNIH
closed
1 year ago
1
Install and configure test `coverage`
#195
mbopfNIH
closed
1 year ago
0
add hidden param that prevents removal of temp work dir
#194
philipmac
closed
1 year ago
0
Added additional tests of utils.py
#193
mbopfNIH
closed
1 year ago
1
Add some more utils.py tests
#192
mbopfNIH
closed
1 year ago
1
Get basic unit tests running on HPC
#191
mbopfNIH
closed
10 months ago
0
set std err and std out as files in FilePath
#190
philipmac
opened
1 year ago
0
Added utils tests; cleaned up test dir
#189
mbopfNIH
closed
1 year ago
1
Write tests for utils.py and refactor tests
#188
mbopfNIH
closed
1 year ago
3
PERF: Combine newstack commands which apply transforms.
#187
blowekamp
closed
1 year ago
2
investigate using mrcfile.pm for tasks such as reading header
#186
philipmac
opened
1 year ago
1
Added Prefect to requirements.txt and improved docstrings
#185
mbopfNIH
closed
1 year ago
0
ongoing 500s from API machine
#184
philipmac
closed
1 year ago
1
create new pipeline converting 2D IF czi inputs
#183
philipmac
closed
1 year ago
1
create new pipeline converting 2D RGB pngs
#182
philipmac
closed
1 year ago
1
Test integration of zarr work on Hedwig website with new neuroglancer version
#181
philipmac
closed
1 year ago
1
test bioformats2raw on HPC
#180
philipmac
closed
1 year ago
1
substitute pyramid generation for bioformats2raw in FIBSEM
#179
philipmac
closed
1 year ago
1
substitute pyramid generation for bioformats2raw in BRT
#178
philipmac
closed
1 year ago
1
ensure bioformats2raw loads properly on HPC
#177
philipmac
closed
1 year ago
1
chase down continued HPC file system issues (on delete)
#176
philipmac
closed
1 year ago
1
Added docstrings and improved Sphinx docs - mostly FilePath
#175
mbopfNIH
closed
1 year ago
1
Improve documentation and understand FilePath class
#174
mbopfNIH
closed
1 year ago
1
Describe converting MRC images to OME-NGFF (zarr)
#173
blowekamp
closed
1 year ago
6
Add bioformats2raw usage for HPC
#172
philipmac
closed
1 year ago
3
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