nicfel / CoupledMCMC

Adaptive parallel tempering for Beast2
GNU General Public License v3.0
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logHeatedChains should be false by default #13

Closed rbouckaert closed 4 years ago

rbouckaert commented 4 years ago

The template sets logHeatedChains="true" by default, which results in multiple logs being created, which managed to confuse at least one user in thinking they were independent samples from the posterior. Setting the flag to false by default, and only logging them when the user explicitly asks for this may prevent this.

Is there a good reason to keep logHeatedChains to true by default?