search

nicfel / CoupledMCMC

Adaptive parallel tempering for Beast2
GNU General Public License v3.0
7 stars 4 forks source link

Nullpointerexception #17

Open Victaphanta opened 3 years ago

Victaphanta commented 3 years ago

Hi, I think I have set this all OK. It runs fine for the standard beast run, but not coupled mcmc. I get the following error.

Thanks for your help.

Adnan

java.lang.RuntimeException: java.lang.NullPointerException at beast.coupledMCMC.CoupledMCMC.initRun(CoupledMCMC.java:199) at beast.coupledMCMC.CoupledMCMC.run(CoupledMCMC.java:260) at beast.app.BeastMCMC.run(Unknown Source) at beast.app.beastapp.BeastMain.(Unknown Source) at beast.app.beastapp.BeastMain.main(Unknown Source) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at beast.app.beastapp.BeastLauncher.run(Unknown Source) at beast.app.beastapp.BeastLauncher.main(Unknown Source) Caused by: java.lang.NullPointerException at beast.core.Logger.openLogFile(Unknown Source) at beast.core.Logger.init(Unknown Source) at beast.coupledMCMC.CoupledLogger.init(CoupledLogger.java:27) at beast.coupledMCMC.HeatedChain.run(HeatedChain.java:187) at beast.coupledMCMC.CoupledMCMC.initRun(CoupledMCMC.java:196) ... 10 more Fatal exception: java.lang.NullPointerException java.lang.RuntimeException: An error was encounted. Terminating BEAST at beast.app.util.ErrorLogHandler.publish(Unknown Source) at java.logging/java.util.logging.Logger.log(Logger.java:979) at java.logging/java.util.logging.Logger.doLog(Logger.java:1006) at java.logging/java.util.logging.Logger.log(Logger.java:1029) at java.logging/java.util.logging.Logger.severe(Logger.java:1776) at beast.app.beastapp.BeastMain.(Unknown Source) at beast.app.beastapp.BeastMain.main(Unknown Source) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at beast.app.beastapp.BeastLauncher.run(Unknown Source) at beast.app.beastapp.BeastLauncher.main(Unknown Source)