nickbhat bgc_tran issues

nickbhat / bgc_tran

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Bump ipython from 7.7.0 to 8.10.0

#26 dependabot[bot] opened 1 year ago
0
Bump joblib from 0.13.2 to 1.2.0

#25 dependabot[bot] opened 2 years ago
0
Bump numpy from 1.17.0 to 1.22.0

#24 dependabot[bot] opened 2 years ago
0
Bump ipython from 7.7.0 to 7.16.3

#23 dependabot[bot] closed 1 year ago
1
Bump pygments from 2.4.2 to 2.7.4

#22 dependabot[bot] opened 3 years ago
0
Describe antiSMASH types, common biosynthetic domains, and visualize some new BGCs

#21 alexcritschristoph opened 4 years ago
0
What % of antiSMASH "siderophores" have TonB / FecCD?

#20 alexcritschristoph opened 4 years ago
0
Can we predict transporter presence from the presence of specific biosynthetic domains?

#19 alexcritschristoph closed 4 years ago
1
Break down structural figures by type - e.g. shape of the point should be the antiSMASH type

#18 alexcritschristoph opened 4 years ago
1
Convert SBP names to standard nomenclature in the Manuscript

#17 alexcritschristoph opened 4 years ago
0
Are any importers 'core' - and visualize them

#16 alexcritschristoph opened 4 years ago
0
Are there unknown TM domain proteins in BGCs w/o transporters?

#15 alexcritschristoph closed 4 years ago
1
Create and run 'transporter location' script on all BGCs

#14 alexcritschristoph closed 4 years ago
1
Can we predict BGCs w/o from BGCs w/ transporters?

#13 alexcritschristoph closed 4 years ago
1
Add code for mibig2 data processing

#12 alexcritschristoph closed 4 years ago
0
Can you output rare class examples in decision trees?

#11 alexcritschristoph closed 4 years ago
1
Figure out BGCs with no MIBiG Metadata

#10 nickbhat closed 4 years ago
1
Compare various domain sets

#9 alexcritschristoph closed 4 years ago
1
Prepare script for running siderophore classifier on fasta of genes.

#8 nickbhat closed 4 years ago
0
Perform stability analysis for all classifiers

#7 nickbhat closed 4 years ago
2
Compare LASSO and decision tree

#6 nickbhat closed 4 years ago
2
Produce mibig siderophore dataset

#5 nickbhat closed 4 years ago
13
Produce mibig molecular weight dataset

#4 nickbhat closed 4 years ago
8
Create dataset descriptions

#3 nickbhat closed 4 years ago
1
Lfs migration

#2 nickbhat closed 4 years ago
0
Lfs migration

#1 nickbhat closed 4 years ago
0