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nickjcroucher
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gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
http://nickjcroucher.github.io/gubbins/
GNU General Public License v2.0
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Jar memory fixes
#331
Closed
jdaeth274
closed
2 years ago
jdaeth274
commented
2 years ago
Switching to passing array of arrays into
reconstruct_alignment_column
Explicitly using spawn for multiprocessing
Switching to Int8 format numpy array for jar output
Converting int8 to character with
int_to_seq
Adding in scripts for alignment checking and using
treeWAS
reconstruct_alignment_columnint_to_seq