nickjcroucher / gubbins

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
http://nickjcroucher.github.io/gubbins/
GNU General Public License v2.0
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Update alignment generation methods #367

Closed nickjcroucher closed 1 year ago

nickjcroucher commented 1 year ago
codecov-commenter commented 1 year ago

Codecov Report

Patch coverage: 100.00% and project coverage change: +0.08 :tada:

Comparison is base (f7ef47e) 91.06% compared to head (c2d0ac0) 91.15%.

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #367 +/- ## ========================================== + Coverage 91.06% 91.15% +0.08% ========================================== Files 45 45 Lines 5765 5776 +11 ========================================== + Hits 5250 5265 +15 + Misses 515 511 -4 ``` | [Impacted Files](https://app.codecov.io/gh/nickjcroucher/gubbins/pull/367?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None) | Coverage Δ | | |---|---|---| | [python/gubbins/tests/test\_python\_scripts.py](https://app.codecov.io/gh/nickjcroucher/gubbins/pull/367?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-cHl0aG9uL2d1YmJpbnMvdGVzdHMvdGVzdF9weXRob25fc2NyaXB0cy5weQ==) | `97.08% <100.00%> (+0.25%)` | :arrow_up: | ... and [1 file with indirect coverage changes](https://app.codecov.io/gh/nickjcroucher/gubbins/pull/367/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None)

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