Muliple sequence alignment as input

nickjcroucher / gubbins

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

http://nickjcroucher.github.io/gubbins/

GNU General Public License v2.0

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Muliple sequence alignment as input #375

Closed tbazilegith closed 1 year ago

tbazilegith commented 1 year ago

Hi Nick, Does gubbins take multiple sequence alignment as input? I have fasta files for several strains of a species - wonder if I can align those fasta sequences Thanks, TJ

nickjcroucher commented 1 year ago

Yes - please see the tutorial. You should check your isolates are closely related using software such as PopPUNK.