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nickjcroucher / gubbins

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
http://nickjcroucher.github.io/gubbins/
GNU General Public License v2.0
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Gubbins input file error #393

Closed marianajeeb closed 6 months ago

marianajeeb commented 7 months ago

Hello,

I tried to install Gubbins in Conda environment, but failed to do using every command. Later, I installed it from the source code. I have created input alignment using "ska". However, when trying to run with Gubbins.py command its giving input file error. Could you please help, how do you generate your input file?

Thanks

nickjcroucher commented 6 months ago

Please see https://github.com/nickjcroucher/gubbins/blob/master/docs/gubbins_tutorial.md.