Multithreading not working on v3.3

nickjcroucher / gubbins

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

http://nickjcroucher.github.io/gubbins/

GNU General Public License v2.0

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Multithreading not working on v3.3 #400

Closed Alejandro-PI closed 6 months ago

Alejandro-PI commented 6 months ago

Hi! I want to use Gubbins on 11k genomes. I'm using version 3.3 as more recent versions couldn't be installed. However I notices that multithreading was not working despite using the --threads 6 option. Is it a issue of the version?

nickjcroucher commented 6 months ago

Not every step of the algorithm is yet multithreaded - e.g. recombination detection - but most of the algorithm should be parallelised.