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nickmckay / lipdR

lipdR package development repository
https://nickmckay.github.io/lipdR
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Connection error to lipidverse.org when trying to install #18

Open kurtlindberg opened 1 month ago

kurtlindberg commented 1 month ago

Hello! I seem to have encountered a new issue when installing 'lipdR' using the instructions from the GitHub readme. I've pasted the full error message below, stating that there is a connection issue during installation when it tries to access part of the lipdverse website. I've tried installation on two different Linux distributions (Debian 12 and Fedora 40) in the last couple of days, both of which had installed successfully within the past month. I also tested the remotes::install_github() function using the examples on the 'remotes' CRAN webpage and had no issue, so I don't think it's a general issue with that package.

Thank you for taking the time to look into this issue!

Full error message after running 'remotes::install_github("nickmckay/lipdR")':

Warning in readRDS(url("https://lipdverse.org/lipdverse/standardTables.RDS"), : URL 'https://lipdverse.org/lipdverse/standardTables.RDS': status was 'SSL peer certificate or SSH remote key was not OK' Error: package or namespace load failed for 'lipdR': .onLoad failed in loadNamespace() for 'lipdR', details: call: readRDS(url("https://lipdverse.org/lipdverse/standardTables.RDS"), errorL cannot open the connection to 'https://lipdverse.org/lipdverse/standardTables.RDS'

aflaim7 commented 1 month ago

I'm also getting a similar error when trying to load an already-installed version of lipdR, which looks like this:

> library(lipdR)
Error: package or namespace load failed for ‘lipdR’:
 .onLoad failed in loadNamespace() for 'lipdR', details:
  call: readRDS(url("https://lipdverse.org/lipdverse/standardTables.RDS"), 
  error: cannot open the connection to 'https://lipdverse.org/lipdverse/standardTables.RDS'
In addition: Warning message:
In readRDS(url("https://lipdverse.org/lipdverse/standardTables.RDS"),  :
  URL 'https://lipdverse.org/lipdverse/standardTables.RDS': status was 'SSL peer certificate or SSH remote key was not OK'

Although, if I manually download "https://lipdverse.org/lipdverse/standardTables.RDS" it loads just fine, so it seems like the path hasn't changed.