Testing with release/v1.0.0 produced the following:
Error with three packages.
$ emDNA-pro-bind --help$ emDNA-force-probe --help$ emDNA-lego-gen --help
[FileException]:
InputFileHandler::read_line() = failed to open file:
./--help
Use of check-collision did not produce an output with structures that do overlap. $ emDNA-check-collision --x3DNA-bp-step-params-input=test035b.par --closed --DNA-radius=2.01`
Testing with release/v1.0.0 produced the following: Error with three packages.
$ emDNA-pro-bind --help
$ emDNA-force-probe --help
$ emDNA-lego-gen --help
[FileException]: InputFileHandler::read_line() = failed to open file: ./--help
Use of check-collision did not produce an output with structures that do overlap.
$ emDNA-check-collision --x3DNA-bp-step-params-input=test035b.par --closed --DNA-radius=2.01`