End-to-end usage demonstration with the relevant DICOM files

[nielsboecker]

Description

We still have not used much of the DICOM input files that were provided to us by the client. We should ingest them to our system ASAP, and then demonstrate that we can process them end-to-end.

Pipline => Use case mapping

Pipeline	Possible inputs
Bone segmentation	All 5 files, especially the healthy and unhealthy pelvis
Lung segmentation	1 file (chest)
Airway sementation	1 file (chest)
Abdominal organs segmentation	2 files (abdominal area, chest?)

Tasks (PIPELINE only)

• run them through the Pipelines
  • see if all goes as expected or if we find problems that we'll need to address
• create and share output files with clear naming (looking at you, Pap 😁)
• share the outputs with @boonwj so he can generate useful test data

Tasks (Integration)

• Demonstrate end-to-end use-case:
  • relevant input for UI (patients with ImagingStudies pointing to the DICOM files on Mock PACS)
  • successful processing in HoloPipelines
  • result stored in Storage
  • 3D model shows up in HoloLens demo app

[nielsboecker]

Any update on this? It would be particularly interesting to know if one can see differences between normal and pathologic data, reflecting the different inputs you suggested @UdomkarnBoonyaprasert @ansonwong9695

[nielsboecker]

I have done this for the report, and @fanbomeng97 has furthermore recorded an end-to-end use case for our final presentation.