PIPELINE: 3D models in bone_segmentation pipeline are weird

nielsboecker / HoloRepository-Core

A system for transforming medical imaging studies into holograms, storing them in the cloud and providing them to other systems.

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PIPELINE: 3D models in bone_segmentation pipeline are weird #62

Closed nielsboecker closed 5 years ago

nielsboecker commented 5 years ago

This might be an issue introduced by my refactoring #45.

I don't think it's related to #57 as this is DICOM only, no NIfTI involved.

nielsboecker commented 5 years ago

I suspect the problem somewhere around dicom_file.py line 110. Because I now fix the orientation before doing the normalising a.k.a. resampling. @UdomkarnBoonyaprasert I think you have a better understanding of this. When you have time, maybe you can branch off the refactoring branch and help with this issue.