search

niermann / temscript

Python wrapper for the scripting interface of Thermo Fisher Scientific and FEI microscopes.
Other
42 stars 14 forks source link

Loading hdf5 with the correct signal shape #1

Closed thomasaarholt closed 6 years ago

thomasaarholt commented 7 years ago

Currently when I try to load my EELS spectrum image saved as a hdf5 from hyperspy (Image with a spectrum in each pixel), DM doesn't know how to format the signal. It attempts to form an image with the spectrum channels on the x axis and the image y-axis as the yaxis. I can solve it by using the Gatan Volume package to rotate about the y-axis, but it isn't exactly ideal. It would be nice if the reader could look the shape information saved in the metadata and implement it correctly in loaded signal.

niermann commented 6 years ago

Just noticed this issue... this probably relates to the project gms_plugin_hdf5 and was already discussed there last summer. So I'm closing it here.

thomasaarholt commented 6 years ago

Huh, I'm unsure why I posted it here then. Cheers though.