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nigyta / dfast_core

DDBJ Fast Annotation and Submission Tool
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HTTP Error 308: Permanent Redirect #35

Open rzhan186 opened 3 years ago

rzhan186 commented 3 years ago

Hello DFAST developers,

I received an HTTP error while running the database building step

dfast_file_downloader.py --protein dfast

error messages:

Traceback (most recent call last): File "/scratch/dfast_core-1.2.12/scripts/dfast_file_downloader.py", line 222, in retrieved_file = retrieve_dfast_reference(db_name, out_dir) File "/scratch/ruizhang/dfast_core-1.2.12/scripts/dfast_file_downloader.py", line 106, in retrieve_dfast_reference request.urlretrieve(target_url, output_file) File "/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx512/Core/python/3.8.10/lib/python3.8/urllib/request.py", line 247, in urlretrieve with contextlib.closing(urlopen(url, data)) as fp: File "/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx512/Core/python/3.8.10/lib/python3.8/urllib/request.py", line 222, in urlopen return opener.open(url, data, timeout) File "/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx512/Core/python/3.8.10/lib/python3.8/urllib/request.py", line 531, in open response = meth(req, response) File "/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx512/Core/python/3.8.10/lib/python3.8/urllib/request.py", line 640, in http_response response = self.parent.error( File "/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx512/Core/python/3.8.10/lib/python3.8/urllib/request.py", line 569, in error return self._call_chain(args) File "/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx512/Core/python/3.8.10/lib/python3.8/urllib/request.py", line 502, in _call_chain result = func(args) File "/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx512/Core/python/3.8.10/lib/python3.8/urllib/request.py", line 649, in http_error_default raise HTTPError(req.full_url, code, msg, hdrs, fp) urllib.error.HTTPError: HTTP Error 308: Permanent Redirect

Any insight to fix the issue? Thank you!

Rui

nigyta commented 3 years ago

Thank you for trying DFAST, @Rui-Zzhang

Since DFAST web service moved to a new server in February 2021, the URL in the v1.2.12 is no longer accessible.

To avoid the HTTP error, please update the dfast_file_downloader.py script to the latest version (1.2.14), or modify Line-40 of the script as following:

host_dfast = "https://dfast.nig.ac.jp"

to

host_dfast = "https://dfast.ddbj.nig.ac.jp"

Yasuhiro

rzhan186 commented 3 years ago

Hi Yasuhiro,

Thank you for your prompt reply, the issue has now been resolved!

Rui

schraderL commented 3 years ago

Hi, I get the same error when trying to install via conda. Could you update the conda package, so it works with the new server address?

Best lukas

edit: I resolved the issue by requesting a specifc version of dfast with conda install -c bioconda dfast=1.2.14