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nigyta / dfast_core

DDBJ Fast Annotation and Submission Tool
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Process aborted due to an error in DBsearch. #42

Closed maxbranger closed 2 years ago

maxbranger commented 2 years ago

Hello I had an issue using recent version of blast and my own config file for running dfast. I found this issue on abromics https://github.com/tseemann/abricate/issues/76 which helped me to try a fix.

I am using conda envs and the problem is gone when I use blast 2.7.1 version insted of more recent versions.

2022/03/23 11:12:08 Process aborted due to an error in DBsearch.
2022/03/23 11:12:08 Warning: [blastp] Examining 5 or more matches is recommended

So, the problem can be solved only by using an oldest version of blast by I guess it could be good to fix this if it is possible ? As I understand, it is only a raised warning that doesnt block the execution of blast. But this raise an error on the pipeline that cancelled the process.

At least, I hope it could help someone with the same issue.

nigyta commented 2 years ago

@maxbranger Thank you for letting me know. I was able to reproduce this with the latest version of BLASTP and have fixed it.

Please wait a few more days until I bump the version number, since I have another issue that I want to fix.

If you are in hurry, replace the file dfc/components/baseComponent.py with the latest one, which is abailable from here

maxbranger commented 2 years ago

Thank you a lot for your rapidity !