jeremywalter commented 2 years ago

Add a comment containing your interesting links and announcements here! Let us know under which heading your post belongs (or add your own): Critical Announcements Events Meeting Outcomes Resources Tools New Releases Welcome/Farewell

*Please let us know if you would like your Announcements to be added to the Cross Pollination mailing list which includes Data Centers not onboarded with the CFDE.

jeremywalter commented 2 years ago

Bethesda save the date

jeremywalter commented 2 years ago

RFC update

jeremywalter commented 2 years ago

Farewell

IDG: Joel Berendzen, Nicholas Stanford

jessicalumian commented 2 years ago

We will have some text to announce the portal release. I'll post it here Monday.

jessicalumian commented 2 years ago

CFDE Portal Data and Feature Update

We are excited to announce a new release of the Common Fund Data Ecosystem Portal! This release features both a data and feature update!

We are very excited to announce the addition of a new Common Fund group: Glycosciences! The goal of Glycosciences is to create new resources, tools, and methods to make the study of sugars more accessible to the broader research community.

Common Fund Programs on the CFDE Portal:

4D Nucleome Data Coordination and Integration Center
Extracellular RNA Communication
The Gabriella Miller Kids First Pediatric Research Program
Genotype-Tissue Expression
Glycosciences
The Human BioMolecular Atlas Program
The Human Microbiome Project
Illuminating the Druggable Genome
Library of Integrated Network-based Cellular Signatures
Stimulating Peripheral Activity to Relieve Conditions
University of California San Diego Metabolomics Workbench

New CFDE Portal Features:

Personal collections can be created and exported. Users can create collections of data they are interested in and search within a collection.
New icons on the homepage allow users to start a search by disease, gene, or compound.
Users can now search for new types of data: time series, proteins, compounds, and substances. These can be searched for at the individual level or within a project or collection group. For example, users can search for the compound T-disaccharide in kidneys in a collection. An example of this search is here.

CFDE Portal Summary Facts:

The CFDE Search Portal now contains data from eleven different Common Fund Programs
Data types on the Portal include assays, DNA and RNA sequences, images, text reports, and more
Available data can be visualized on the “Preview the data” section of the homepage

The CFDE Portal can be accessed at: https://app.nih-cfde.org/ Portal documentation can be found here: https://docs.nih-cfde.org/en/latest/about/portalguide/

Please direct any questions about the CFDE Portal to support@cfde.atlassian.net

NatalieMSturgeon commented 2 years ago

JUNE ALL HANDS MEETING The CFDE Program Team is pleased to announce we will be holding the annual CFDE Program Meeting will be on June 9-10, 2022 at the Bethesdan hotel in Bethesda, MD. The purpose of this meeting is to bring together the CFDE community to review progress over the past year and discuss strategic issues that impact the ecosystem as a whole. At this time, we are striving for an all in-person meeting. Link to book your stay is below. We look forward to seeing you all soon! Best, CFDE Coordination Team Booking Link: https://www.hilton.com/en/book/reservation/deeplink/?ctyhocn=WASBAUP&groupCode=AH6&arrivaldate=2022-06-08&departuredate=2022-06-10&cid=OM,WW,HILTONLINK,EN,DirectLink&fromId=HILTONLINKDIRECT

raynamharris commented 2 years ago

A flyer for printing and hanging on the wall. announcments.pdf announcments-1

raynamharris commented 2 years ago

flyer for printing

announcments.pdf announcments-1

raynamharris commented 2 years ago

2022-05-02-flier-1

2022-05-02-flier.pdf

CFDE Announcements

June All-Hands Meeting

The CFDE Program Team is pleased to announce we will be holding the annual CFDE Program Meeting on June 9-10, 2022 at the Bethesdan hotel in Bethesda, MD. The purpose of this meeting is to bring together the CFDE community to review progress over the past year and discuss strategic issues that impact the ecosystem as a whole. At this time, we are striving for an all in-person meeting. Click here to book.

Cross-Pollination Events

Our next scheduled meeting will take place Today, May 3rd at 11am PT / 2pm ET. We will have CFDE announcements and a presentation CFChemDb. Regular Cross-Pollination events take place on the first Tuesday of every month. Please check out the Cross-Pollination Schedule for more details. Please let us know at support@cfde.atlassian.net if you have something to share!

CFDE May Hackathon

The second CFDE Hackathon will take place 5/9 - 5/13 (rescheduled from 4/26 - 4/29). This event will showcase CFDE datasets (a data jamboree if you will!). This event will feature workshops and demos from the CFDE-CC, Kids First, and SPARC! More details about sessions will be available very soon. You can register for this event here!

RFC - Open for Comments

The FAIR Principles for Sharing Information and Knowledge about Variants Regulating Gene Expression RFC is now closed for comments and being considered for adoption. Please relay any concerns to the CFDE helpdesk at support@cfde.atlassian.net.

CFDE Portal Data and Feature Update

We are excited to announce a new release of the Common Fund Data Ecosystem Portal! This release features both a data and feature update!

We are very excited to announce the addition of a new Common Fund group: Glycosciences! The goal of Glycosciences is to create new resources, tools, and methods to make the study of sugars more accessible to the broader research community.