Closed jeremywalter closed 1 year ago
raynamharris
commented
1 year ago Seven Bridges has released NextFlow as an additional workflow language! The Seven Bridges team is looking for users to test the implementation. If you would like to be part of a 45 min user centric design interview and be compensated $75, please fill out this form.
jeremywalter
commented
1 year ago GTEx: Lisa Anderson
raynamharris
commented
1 year ago Can we include something like this every week please?
We have transitioned to a new onboarding system for the CFDE. New members will need a member sponsor to fill out the onboarding form after logging on to the CFDE Website. The new member will then need to accept the invitations to Slack, GitHub, Google Groups, and Groups.io to complete the onboarding process.
jeremywalter
commented
1 year ago Subject: Common Fund Data Ecosystem (CFDE) Funding Opportunity: Pilot Projects Enhancing Utility and Usage of Common Fund Data Sets
The NIH Common Fund supports transformative research programs that generate new technologies, methods, and data. Many of these programs produce rich public data sets containing various multi-dimensional molecular and phenotypic data from a range of sources. To maximize the impact of these data, engage a diverse community of end-users for broader adoption of these data sets, and to obtain feedback from award recipients to enhance the data resources, the Common Fund plans to support small research projects (R03) using data sets from two or more Common Fund programs. Awards are intended to enable novel and compelling biological questions to be formulated and addressed, and/or to generate cross-cutting hypotheses for future research. Investigators may add publicly available datasets to their proposals.
The goals of this funding opportunity announcement (RFA-RM-23-003) are to 1) promote the use of Common Fund data sets by supporting pilot studies based on analyses across two or more Common Fund program data sets; 2) enhance the utility of existing Common Fund data sets by developing workflows, analytic and simulation tools which will enable simultaneous analysis of multiple Common Fund data sets; and 3) demonstrate the added-value of integrating multiple Common Fund data resources in addressing biomedical research questions.
Funding Opportunity Announcement Pilot Projects Enhancing Utility and Usage of Common Fund Data Sets (R03 Clinical Trial Not Allowed) (RFA-RM-23-003)
Eligible Common Fund Program Data Sets • 4D Nucleome (4DN) • Extracellular RNA Communication (ExRNA) • Gabriella First Kids First (KF) • Genotype-Tissue Expression (GTEx) • Glycoscience (GL) • Human BioMolecular Atlas Program (HuBMAP) • Illuminating the Druggable Genome (IDG) • Integrated Human Microbiome Project (iHMP) • Knockout Mouse Phenotyping Program (KOMP2) • Library of Integrated Network-based Cellular Signatures (LINCS) • Metabolomics Workbench • Molecular Transducers of Physical Activity in Humans (MoTrPAC) • Stimulating Peripheral Activity to Relieve Conditions (SPARC)
A note for ESIs: R21s, R03s or K awards do not impact your New Investigator status.
Important Dates Applications are due February 3, 2023, by 5:00 pm local time of the applicant organization.
Find answers to Frequently Asked Questions (FAQs) and learn more on the Enhancing the Use of Common Fund Data website. You can contact the CFDE team at CFDE@od.nih.gov with any additional questions.
Please share this information widely with interested colleagues and relevant email lists.
jeremywalter
commented
1 year ago Some teams are transitioning to the proposed monthly meeting scheduled beginning in January. If your team is making this transition there will be a flurry of cancellation and updated cancellations in your inbox. If you are in doubt, check the rolling agenda for your team meeting and plan accordingly. Notify the helpdesk (support@cfde.atlassian.net) if you are missing an invitation or cannot find your meeting.
jeremywalter
commented
1 year ago The next meeting is TOMORROW, Tuesday, December 6th, at 2 pm ET/ 11 am PT. The meeting agenda includes three CFDE Partnership Talks on the Gene-Centric Dashboard, Toxicology, and CLOVoc (Clinical Observations and Vocabularies). Regular Cross-Pollination events take place on the first Tuesday of every month. View the Cross-Pollination Schedule for more details. Email support@cfde.atlassian.net if you would like to present.
The next data submission period for C2M2 will take place between December 1st and January 9th. Successful new submissions are planned to roll out to production on January 19th.
One RFC is now available for comment by the community until December 25th
• Building Ontology Slims for CFDE
RFC stands for “Requests for Comments”. These are proposals being made by members of the CFDE to suggest that the CFDE community as a whole adopt the suggested new best practice. Everyone in the community is invited to respond to these proposals by leaving comments, critiques, and support at the links above. Comments are open for one month at which point the documents will be reviewed. If there are no substantial objections to the RFC in that time, it will be adopted as a CFDE Best Practice. You can read more about our RFC process here.
Seven Bridges has released NextFlow as an additional workflow language! The Seven Bridges team is looking for users to test the implementation. If you would like to be part of a 45 min user centric design interview and be compensated $75, please fill out this form.
Pilot Projects Enhancing Utility and Usage of Common Fund Data Sets (R03 Clinical Trial Not Allowed) (RFA-RM-23-003)
The goals of this funding opportunity announcement (RFA-RM-23-003) are to 1) promote the use of Common Fund data sets by supporting pilot studies based on analyses across two or more Common Fund program data sets; 2) enhance the utility of existing Common Fund data sets by developing workflows, analytic and simulation tools which will enable simultaneous analysis of multiple Common Fund data sets; and 3) demonstrate the added-value of integrating multiple Common Fund data resources in addressing biomedical research questions.
Eligible Common Fund Program Data Sets • 4D Nucleome (4DN) • Extracellular RNA Communication (ExRNA) • Gabriella First Kids First (KF) • Genotype-Tissue Expression (GTEx) • Glycoscience (GL) • Human BioMolecular Atlas Program (HuBMAP) • Illuminating the Druggable Genome (IDG) • Integrated Human Microbiome Project (iHMP) • Knockout Mouse Phenotyping Program (KOMP2) • Library of Integrated Network-based Cellular Signatures (LINCS) • Metabolomics Workbench • Molecular Transducers of Physical Activity in Humans (MoTrPAC) • Stimulating Peripheral Activity to Relieve Conditions (SPARC)
Applications are due February 3, 2023, by 5:00 pm local time of the applicant organization.
Find answers to Frequently Asked Questions (FAQs) and learn more on the Enhancing the Use of Common Fund Data website. You can contact the CFDE team at CFDE@od.nih.gov with any additional questions.
| You can find a list of CFDE WGs and linked agendas on the Cross-Pollination Meeting Schedule. Currently scheduled working group meetings are as follow: | Working Group | Date | Time | Agenda |
|---|---|---|---|---|
| Knowledge Graph | Dec 21st | 12pm PT / 3pm ET | Knowledge Graph WG | |
| Ontology | Dec 14th | 8am PT / 11am ET | Ontology WG |
Some teams are transitioning to the proposed monthly meeting scheduled beginning in January. If your team is making this transition there will be a flurry of cancellation and updated cancellations in your inbox. If you are in doubt, check the rolling agenda for your team meeting and plan accordingly. Notify the helpdesk (support@cfde.atlassian.net) if you are missing an invitation or cannot find your meeting.
GTEx: Lisa Anderson
You can contribute to the next announcements by commenting on the open announcements issue in this repository. Share your events and updates by posting links and descriptions in our announcements issue! If you have questions about these or other events/activities in the CFDE, contact our helpdesk at support@cfde.atlassian.net.
Thank you all for your efforts and have a great week!
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