An updated C2M2 model replaces biosample.assay_type with biosample.sample_prep_method referring to a new sample_prep_method vocabulary.
We want to allow submission of data with this new field while also allowing a release to be built using current submissions, in case a DCC chooses not to resubmit.
Add the sample_prep_method vocab and datapackage associations to the registry to allow tracking of term usage
Add the sample_prep_method vocab table to submission and portal models
Tolerate the deprecated biosample.assay_type field for backward-compatibility
Adjust text search indexing to ingore biosample.assay_type as a source of keyword material
Adjust the core_fact.assay_types dimension to only observe the file.assay_type field (basis for Assay Type facets in UI)
Add new core_fact.sample_prep_methods dimension and Sample Prep Method facets in the UI
An updated C2M2 model replaces
biosample.assay_type
withbiosample.sample_prep_method
referring to a newsample_prep_method
vocabulary.We want to allow submission of data with this new field while also allowing a release to be built using current submissions, in case a DCC chooses not to resubmit.
sample_prep_method
vocab and datapackage associations to the registry to allow tracking of term usagesample_prep_method
vocab table to submission and portal modelsbiosample.assay_type
field for backward-compatibilitybiosample.assay_type
as a source of keyword materialcore_fact.assay_types
dimension to only observe thefile.assay_type
field (basis forAssay Type
facets in UI)core_fact.sample_prep_methods
dimension andSample Prep Method
facets in the UI