pages to review for august release

[raynamharris]

Here are links with markdown content from the sprint for preview/testing purposes.

Production

Anatomy

• [ ] https://app.nih-cfde.org/chaise/record/#1/CFDE:anatomy/id=UBERON%3A0000007 Embl link, Knowledge Graph text, GTEx widget

Compound

• [ ] https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/id=G99997WS Glycan only
• [ ] https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/id=1000 PubChem and DrugCentral
• [ ] https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/id=10000009 PubChem and Glycan
• [ ] https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/id=10000456 PubChem and Knowledge Graph

Disease

• [ ] https://app.nih-cfde.org/chaise/record/#1/CFDE:disease/id=DOID%3A9970 links and associated genes/proteins
• [ ] https://app.nih-cfde.org/chaise/record/#1/CFDE:disease/id=DOID%3A10016 links and associated genes/proteins

Gene

• [ ] https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/id=ENSG00000000003 Aliases, LINCS text, and GTEx, LINCS, transcript , and UCSD iframe
• [ ] https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/id=ENSG00000000419 Aliases, LINCS text and MetGene, GTEx, LINCS and transcript iframes
• [ ] https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/id=ENSG00000001626 Aliases, LINCS text, Diseases, and MetGene, GTEx, LINCS and transcript iframes
• [ ] https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/id=ENSG00000133136 LINCS text and iframe

Protein

• [ ] https://app.nih-cfde.org/chaise/record/#1/CFDE:protein/id=A0A023IKK2 alias links and diseases
• [ ] https://app.nih-cfde.org/chaise/record/#1/CFDE:protein/id=P0DTC2 alias links only
• [ ] https://app.nih-cfde.org/chaise/record/#1/CFDE:protein/id=P14210 alias links only

Staging

Anatomy

• [ ] UBERON:0000007 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:anatomy/nid=1 Embl link, Knowledge Graph text, GTEx widget
• [ ] UBERON:0000948 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:anatomy/nid=114 Embl link and Knowledge Graph text
• [ ] UBERON:0000002 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:anatomy/nid=53 Embl link only

Gene

• [ ] ENSG00000001626 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:gene/nid=39 Aliases, LINCS text, Diseases, and MetGene, GTEx, LINCS and transcript iframes
• [ ] ENSG00000000419 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:gene/nid=35 Aliases, LINCS text and MetGene, GTEx, LINCS and transcript iframes
• [ ] ENSG00000133136 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:gene/nid=10523 LINCS text and iframe
• [ ] ENSG00000000003 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:gene/nid=3892 Aliases, LINCS text, and GTEx, LINCS, transcript , and UCSD iframe

Disease

• [ ] DOID:9970 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:disease/nid=8 links only
• [ ] DOID:10016 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:disease/nid=108 links plus associated genes and proteins

Compound

• [ ] 1000 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:compound/nid=33764 PubChem and DrugCentral
• [ ] 10000009 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:compound/nid=1 PubChem and Glycan
• [ ] G99997WS https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:compound/nid=33754 Glycan only
• [ ] 10000456 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:compound/nid=33765 PubChem and Knowledge Graph

Protein

• [ ] P14210 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:protein/nid=24102 alias links only
• [ ] P0DTC2 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:protein/nid=23502 alias links only
• [ ] A0A023IKK2 https://app-staging.nih-cfde.org/chaise/record/#1/CFDE:protein/nid=1 alias links and diseases

[raynamharris]

[raynamharris]

created some short tests lists with the IDs above and pushed some content to production for review. See branch test-prod at https://github.com/nih-cfde/update-content-registry/tree/prod-test/data/inputs/test

[raynamharris]

you can run this R code to open up all the pages for review in a browser

browseURL("https://app.nih-cfde.org/chaise/record/#1/CFDE:anatomy/id=UBERON%3A0000007")
browseURL("https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/id=G99997WS")
browseURL("https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/id=1000")
browseURL("https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/id=10000009")        
browseURL("https://app.nih-cfde.org/chaise/record/#1/CFDE:compound/id=10000456") 
browseURL("https://app.nih-cfde.org/chaise/record/#1/CFDE:disease/id=DOID%3A9970") 
browseURL("https://app.nih-cfde.org/chaise/record/#1/CFDE:disease/id=DOID%3A10016") 
browseURL("https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/id=ENSG00000000003") 
browseURL("https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/id=ENSG00000000419") 
browseURL("https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/id=ENSG00000001626") 
browseURL("https://app.nih-cfde.org/chaise/record/#1/CFDE:gene/id=NSG00000133136") 
browseURL("https://app.nih-cfde.org/chaise/record/#1/CFDE:protein/id=A0A023IKK2")
browseURL("https://app.nih-cfde.org/chaise/record/#1/CFDE:protein/id=P0DTC2")
browseURL("https://app.nih-cfde.org/chaise/record/#1/CFDE:protein/id=P14210")

[raynamharris]

done.