The pipeline expects a data directory inside the project's directory.

[nikostourvas]

The pipeline expects a data directory inside the project's directory. This is good because it allows us to use relative paths. This is bad in the case that multiple people would like to run analyses, as data would need to be duplicated for each user.

Singularity offer a solution: Use the --bind option to point to the data folder. This should work similarly to the relative path approach as in any server the data directory can be attached to the virtual /mnt directory of singularity's containers

[nikostourvas]

Resolved by pointing ../data to /mnt/data as suggested