nilqed
commented
7 years ago Hello Bill
The first oddity is:
WARNING: Couldn't re-execute SBCL with proper personality flags (/proc isn't mounted? setuid?) Trying to continue anyway.
That's just the same error I've seen in BashOnWindows some month ago. I filed an issue: https://github.com/Microsoft/BashOnWindows/issues/1128 What OS do you use in the docker? I've never seen this warning on Linux before.
Next is "fatal error: zmq.h: No such file or directory": -- that usually indicates a missing ZMQ devel installation. -- You need a libzmq4-dev (version 5 won't work). -- On Ubuntu there is only 3&5, so you have to use the script -- https://gist.github.com/cdjhlee/b8e3c927a01b0948b42d which -- I've linked to on https://github.com/nilqed/fricas_jupyter recently.
Merry Christmas to you. Kurt
Am 24.12.2016 um 18:54 schrieb Bill Page:
In a recent version of SMC running in Docker https://github.com/sagemathinc/smc/tree/master/src/dev/docker I tried following the instructions in the readme here to install FriCAS with the Jupyter kernel. But the installation failed with the following message:
$ fricas bash: fricas: command not found ~$ git clone https://github.com/nilqed/fricas_smc.git Cloning into 'fricas_smc'... remote: Counting objects: 29, done. Unpacking objects: 3% (1/29) ... ~$ cd fricas_smc ~/fricas_smc$ ls LICENSE README.md setup.sh ~/fricas_smc$ ./setup.sh Collecting jupyter Downloading jupyter-1.0.0-py2.py3-none-any.whl Collecting ipykernel (from jupyter) Downloading ipykernel-4.5.2-py2.py3-none-any.whl (98kB) ... ---------------- SBCL installed ? ---------------- SBCL_HOME set ... ok. /projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/sbcl ----------------- SBCL executable ? ----------------- SBCL 1.2.16 SBCL executable ... ok. ------------------------------------------- SBCL/QuickLisp dependencies ... pre-loading ------------------------------------------- WARNING: Couldn't re-execute SBCL with proper personality flags (/proc isn't mounted? setuid?) Trying to continue anyway. This is SBCL 1.2.16, an implementation of ANSI Common Lisp. More information about SBCL is available at <http://www.sbcl.org/>. SBCL is free software, provided as is, with absolutely no warranty. It is mostly in the public domain; some portions are provided under BSD-style licenses. See the CREDITS and COPYING files in the distribution for more information. To load "pzmq": Load 1 ASDF system: pzmq ; Loading "pzmq" [package pzmq]; cc -m64 -I/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/quicklisp/dists/quicklisp/software/cffi_0.16.1/ -o /projects/56bd6e8e-e865-4e95-8010-63211abfea76/.cache/common-lisp/sbcl-1.2.16-linux-x64/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/quicklisp/dists/quicklisp/software/pzmq-20150608-git/grovel /projects/56bd6e8e-e865-4e95-8010-63211abfea76/.cache/common-lisp/sbcl-1.2.16-linux-x64/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/quicklisp/dists/quicklisp/software/pzmq-20150608-git/grovel.c While evaluating the form starting at line 2, column 0 of #P"/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/lisp/quick.lisp": Unhandled CFFI-GROVEL:GROVEL-ERROR in thread A nested error within --disable-debugger error handling prevents displaying the original error. Attempting to print a backtrace. Backtrace for: #<SB-THREAD:THREAD "main thread" RUNNING {1002C7CCF3}> 0: ((LAMBDA NIL :IN SB-DEBUG::FUNCALL-WITH-DEBUG-IO-SYNTAX)) 1: (SB-IMPL::CALL-WITH-SANE-IO-SYNTAX #<CLOSURE (LAMBDA NIL :IN SB-DEBUG::FUNCALL-WITH-DEBUG-IO-SYNTAX) {1005B1CB0B}>) 2: (SB-IMPL::%WITH-STANDARD-IO-SYNTAX #<CLOSURE (LAMBDA NIL :IN SB-DEBUG::FUNCALL-WITH-DEBUG-IO-SYNTAX) {1005B1CADB}>) 3: (SB-DEBUG:PRINT-BACKTRACE :STREAM #<SYNONYM-STREAM :SYMBOL SB-SYS:*STDERR* {1000152823}> :START 0 :FROM :INTERRUPTED-FRAME :COUNT NIL :PRINT-THREAD T :PRINT-FRAME-SOURCE NIL :METHOD-FRAME-STYLE NIL) 4: (SB-DEBUG::DEBUGGER-DISABLED-HOOK #<CFFI-GROVEL:GROVEL-ERROR "External process exited with code ~S.~@ Command was: ~S~{ ~S~}~@ Output was:~%~A" {1005B18C93}> #<unavailable argument>) 5: (SB-DEBUG::RUN-HOOK SB-EXT:*INVOKE-DEBUGGER-HOOK* #<CFFI-GROVEL:GROVEL-ERROR "External process exited with code ~S.~@ Command was: ~S~{ ~S~}~@ Output was:~%~A" {1005B18C93}>) 6: (INVOKE-DEBUGGER #<CFFI-GROVEL:GROVEL-ERROR "External process exited with code ~S.~@ Command was: ~S~{ ~S~}~@ Output was:~%~A" {1005B18C93}>) 7: (ERROR CFFI-GROVEL:GROVEL-ERROR :FORMAT-CONTROL "External process exited with code ~S.~@ Command was: ~S~{ ~S~}~@ Output was:~%~A" :FORMAT-ARGUMENTS (1 "cc" ("-m64" "-I/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/quicklisp/dists/quicklisp/software/cffi_0.16.1/" "-o" "/projects/56bd6e8e-e865-4e95-8010-63211abfea76/.cache/common-lisp/sbcl-1.2.16-linux-x64/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/quicklisp/dists/quicklisp/software/pzmq-20150608-git/grovel" "/projects/56bd6e8e-e865-4e95-8010-63211abfea76/.cache/common-lisp/sbcl-1.2.16-linux-x64/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/quicklisp/dists/quicklisp/software/pzmq-20150608-git/grovel.c") "/projects/56bd6e8e-e865-4e95-8010-63211abfea76/.cache/common-lisp/sbcl-1.2.16-linux-x64/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/quicklisp/dists/quicklisp/software/pzmq-20150608-git/grovel.c:6:17: fatal error: zmq.h: No such file or directory compilation terminated. ")) 8: (CFFI-GROVEL:GROVEL-ERROR "External process exited with code ~S.~@ Command was: ~S~{ ~S~}~@ Output was:~%~A" 1 "cc" ("-m64" "-I/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/quicklisp/dists/quicklisp/software/cffi_0.16.1/" "-o" "/projects/56bd6e8e-e865-4e95-8010-63211abfea76/.cache/common-lisp/sbcl-1.2.16-linux-x64/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/quicklisp/dists/quicklisp/software/pzmq-20150608-git/grovel" "/projects/56bd6e8e-e865-4e95-8010-63211abfea76/.cache/common-lisp/sbcl-1.2.16-linux-x64/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/quicklisp/dists/quicklisp/software/pzmq-20150608-git/grovel.c") "/projects/56bd6e8e-e865-4e95-8010-63211abfea76/.cache/common-lisp/sbcl-1.2.16-linux-x64/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/quicklisp/dists/quicklisp/software/pzmq-20150608-git/grovel.c:6:17: fatal error: zmq.h: No such file or directory compilation terminated. ") 9: (CFFI-GROVEL::INVOKE #<unavailable argument> "-m64" "-I/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/quicklisp/dists/quicklisp/software/cffi_0.16.1/" "-o" "/projects/56bd6e8e-e865-4e95-8010-63211abfea76/.cache/common-lisp/sbcl-1.2.16-linux-x64/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/quicklisp/dists/quicklisp/software/pzmq-20150608-git/grovel" "/projects/56bd6e8e-e865-4e95-8010-63211abfea76/.cache/common-lisp/sbcl-1.2.16-linux-x64/projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/quicklisp/dists/quicklisp/software/pzmq-20150608-git/grovel.c") 10: ((LAMBDA NIL :IN CFFI-GROVEL:PROCESS-GROVEL-FILE)) 11: (SB-IMPL::%WITH-STANDARD-IO-SYNTAX #<CLOSURE (LAMBDA NIL :IN CFFI-GROVEL:PROCESS-GROVEL-FILE) {10058675EB}>) 12: ((:METHOD ASDF/ACTION:PERFORM (CFFI-GROVEL::PROCESS-OP CFFI-GROVEL:GROVEL-FILE)) #<CFFI-GROVEL::PROCESS-OP > #<CFFI-GROVEL:GROVEL-FILE "pzmq" "grovel">) [fast-method] 13: ((SB-PCL::EMF ASDF/ACTION:PERFORM) #<unavailable argument> #<unavailable argument> #<CFFI-GROVEL::PROCESS-OP > #<CFFI-GROVEL:GROVEL-FILE "pzmq" "grovel">) 14: ((:METHOD ASDF/ACTION:PERFORM-WITH-RESTARTS :AROUND (T T)) #<CFFI-GROVEL::PROCESS-OP > #<CFFI-GROVEL:GROVEL-FILE "pzmq" "grovel">) [fast-method] 15: ((:METHOD ASDF/PLAN:PERFORM-PLAN (LIST)) ((#<ASDF/LISP-ACTION:PREPARE-OP > . #1=#<ASDF/SYSTEM:SYSTEM "uiop">) (#<ASDF/LISP-ACTION:COMPILE-OP > . #1#) (#<ASDF/LISP-ACTION:LOAD-OP > . #1#) (#2=#<ASDF/LISP-ACTION:PREPARE-OP > . #<ASDF/SYSTEM:SYSTEM #3="pzmq">) (#2# . #4=#<ASDF/LISP-ACTION:CL-SOURCE-FILE #3# "package">) (#5=#<ASDF/LISP-ACTION:COMPILE-OP > . #4#) (#6=#<ASDF/LISP-ACTION:LOAD-OP :VERBOSE NIL> . #4#) (#2# . #7=#<CFFI-GROVEL:GROVEL-FILE #3# "grovel">) (#<CFFI-GROVEL::PROCESS-OP > . #7#) (#5# . #7#) (#6# . #7#) (#2# . #<ASDF/LISP-ACTION:CL-SOURCE-FILE #3# "c-api">) ...) :FORCE NIL) [fast-method] 16: ((FLET SB-C::WITH-IT :IN SB-C::%WITH-COMPILATION-UNIT)) 17: ((:METHOD ASDF/PLAN:PERFORM-PLAN :AROUND (T)) ((#<ASDF/LISP-ACTION:PREPARE-OP > . #1=#<ASDF/SYSTEM:SYSTEM "uiop">) (#<ASDF/LISP-ACTION:COMPILE-OP > . #1#) (#<ASDF/LISP-ACTION:LOAD-OP > . #1#) (#2=#<ASDF/LISP-ACTION:PREPARE-OP > . #<ASDF/SYSTEM:SYSTEM #3="pzmq">) (#2# . #4=#<ASDF/LISP-ACTION:CL-SOURCE-FILE #3# "package">) (#5=#<ASDF/LISP-ACTION:COMPILE-OP > . #4#) (#6=#<ASDF/LISP-ACTION:LOAD-OP :VERBOSE NIL> . #4#) (#2# . #7=#<CFFI-GROVEL:GROVEL-FILE #3# "grovel">) (#<CFFI-GROVEL::PROCESS-OP > . #7#) (#5# . #7#) (#6# . #7#) (#2# . #<ASDF/LISP-ACTION:CL-SOURCE-FILE #3# "c-api">) ...) :VERBOSE NIL) [fast-method] 18: ((FLET SB-C::WITH-IT :IN SB-C::%WITH-COMPILATION-UNIT)) 19: ((:METHOD ASDF/PLAN:PERFORM-PLAN :AROUND (T)) #<ASDF/PLAN:SEQUENTIAL-PLAN {100528F413}> :VERBOSE NIL) [fast-method] 20: ((:METHOD ASDF/OPERATE:OPERATE (ASDF/OPERATION:OPERATION ASDF/COMPONENT:COMPONENT)) #<ASDF/LISP-ACTION:LOAD-OP :VERBOSE NIL> #<ASDF/SYSTEM:SYSTEM "pzmq"> :VERBOSE NIL) [fast-method] 21: ((SB-PCL::EMF ASDF/OPERATE:OPERATE) #<unused argument> #<unused argument> #<ASDF/LISP-ACTION:LOAD-OP :VERBOSE NIL> #<ASDF/SYSTEM:SYSTEM "pzmq"> :VERBOSE NIL) 22: ((LAMBDA NIL :IN ASDF/OPERATE:OPERATE)) 23: ((:METHOD ASDF/OPERATE:OPERATE :AROUND (T T)) #<ASDF/LISP-ACTION:LOAD-OP :VERBOSE NIL> #<ASDF/SYSTEM:SYSTEM "pzmq"> :VERBOSE NIL) [fast-method] 24: ((SB-PCL::EMF ASDF/OPERATE:OPERATE) #<unused argument> #<unused argument> ASDF/LISP-ACTION:LOAD-OP "pzmq" :VERBOSE NIL) 25: ((LAMBDA NIL :IN ASDF/OPERATE:OPERATE)) 26: (ASDF/CACHE:CALL-WITH-ASDF-CACHE #<CLOSURE (LAMBDA NIL :IN ASDF/OPERATE:OPERATE) {100527677B}> :OVERRIDE NIL :KEY NIL) 27: ((:METHOD ASDF/OPERATE:OPERATE :AROUND (T T)) ASDF/LISP-ACTION:LOAD-OP "pzmq" :VERBOSE NIL) [fast-method] 28: ((:METHOD ASDF/OPERATE:OPERATE :AROUND (T T)) ASDF/LISP-ACTION:LOAD-OP "pzmq" :VERBOSE NIL) [fast-method] 29: (QUICKLISP-CLIENT::CALL-WITH-MACROEXPAND-PROGRESS #<CLOSURE (LAMBDA NIL :IN QUICKLISP-CLIENT::APPLY-LOAD-STRATEGY) {1005249C4B}>) 30: (QUICKLISP-CLIENT::AUTOLOAD-SYSTEM-AND-DEPENDENCIES "pzmq" :PROMPT NIL) 31: ((:METHOD QL-IMPL-UTIL::%CALL-WITH-QUIET-COMPILATION (T T)) #<unavailable argument> #<CLOSURE (FLET QUICKLISP-CLIENT::QL :IN QUICKLISP-CLIENT:QUICKLOAD) {10049C0FDB}>) [fast-method] 32: ((:METHOD QL-IMPL-UTIL::%CALL-WITH-QUIET-COMPILATION :AROUND (QL-IMPL:SBCL T)) #<QL-IMPL:SBCL {10032C8533}> #<CLOSURE (FLET QUICKLISP-CLIENT::QL :IN QUICKLISP-CLIENT:QUICKLOAD) {10049C0FDB}>) [fast-method] 33: ((:METHOD QUICKLISP-CLIENT:QUICKLOAD (T)) #<unavailable argument> :PROMPT NIL :SILENT NIL :VERBOSE NIL) [fast-method] 34: (QL-DIST::CALL-WITH-CONSISTENT-DISTS #<CLOSURE (LAMBDA NIL :IN QUICKLISP-CLIENT:QUICKLOAD) {10049A3E6B}>) 35: (SB-INT:SIMPLE-EVAL-IN-LEXENV (QUICKLISP-CLIENT:QUICKLOAD "pzmq") #<NULL-LEXENV>) 36: (SB-EXT:EVAL-TLF (QUICKLISP-CLIENT:QUICKLOAD "pzmq") 1 #<NULL-LEXENV>) 37: ((LABELS SB-FASL::EVAL-FORM :IN SB-INT:LOAD-AS-SOURCE) (QUICKLISP-CLIENT:QUICKLOAD "pzmq") 1) 38: ((LAMBDA (SB-KERNEL:FORM &KEY :CURRENT-INDEX &ALLOW-OTHER-KEYS) :IN SB-INT:LOAD-AS-SOURCE) (QUICKLISP-CLIENT:QUICKLOAD "pzmq") :CURRENT-INDEX 1) 39: (SB-C::%DO-FORMS-FROM-INFO #<CLOSURE (LAMBDA (SB-KERNEL:FORM &KEY :CURRENT-INDEX &ALLOW-OTHER-KEYS) :IN SB-INT:LOAD-AS-SOURCE) {1002C95E9B}> #<SB-C::SOURCE-INFO {1002C95E53}> SB-C::INPUT-ERROR-IN-LOAD) 40: (SB-INT:LOAD-AS-SOURCE #<SB-INT:FORM-TRACKING-STREAM for "file /projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/lisp/quick.lisp" {1002C924A3}> :VERBOSE NIL :PRINT NIL :CONTEXT "loading") 41: ((FLET SB-FASL::LOAD-STREAM :IN LOAD) #<SB-INT:FORM-TRACKING-STREAM for "file /projects/56bd6e8e-e865-4e95-8010-63211abfea76/lib/fricas_jupyter/lisp/quick.lisp" {1002C924A3}> NIL) 42: (LOAD #P"lisp/quick.lisp" :VERBOSE NIL :PRINT NIL :IF-DOES-NOT-EXIST T :EXTERNAL-FORMAT :DEFAULT) 43: (SB-IMPL::PROCESS-EVAL/LOAD-OPTIONS ((:LOAD . "lisp/quick.lisp") (:QUIT))) 44: (SB-IMPL::TOPLEVEL-INIT) 45: ((FLET #:WITHOUT-INTERRUPTS-BODY-84 :IN SB-EXT:SAVE-LISP-AND-DIE)) 46: ((LABELS SB-IMPL::RESTART-LISP :IN SB-EXT:SAVE-LISP-AND-DIE)) unhandled condition in --disable-debugger mode, quitting ; ; compilation unit aborted ; caught 2 fatal ERROR conditions [5] SBCL/QuickLisp failed ... exit. rm: cannot remove './ifricas': No such file or directory rm: cannot remove 'iSPAD': No such file or directory bye!
billpage
In a recent version of SMC running in Docker https://github.com/sagemathinc/smc/tree/master/src/dev/docker I tried following the instructions in the readme here to install FriCAS with the Jupyter kernel. But the installation failed with the following message: