nimh-dsst / dsst-defacing-pipeline

Defacing algorithm to improve and evaluate accuracy for large datasets.
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integrating generate renders to pipeline #32

Closed Arshitha closed 1 year ago

Arshitha commented 1 year ago

This PR includes the following changes:

I've tested the code on two sample datasets from start to end, and its working as expected.

Things to do before it can be merged:

Arshitha commented 1 year ago

README has now been updated.

ericearl commented 1 year ago

I spoke too soon! I got a lot of:

Has the render been created? False

I was testing over an SSH connection on curium from my VPN'ed PC. I don't know whether or not that should have worked... I will try direct on curium one more time and then I'm done. But this begs the question, "how can a user ONLY generate renders if they fail the first time and save all that defacing again?" we may want to file an issue to add --only-generate-renders to skip the defacing over again.

Arshitha commented 1 year ago

@ericearl I'll try this out on curium too but just to confirm, did you have fsleyes on your env?

ericearl commented 1 year ago

Oy. I did forget to activate conda again. Testing over right now...

ericearl commented 1 year ago

It was the conda environment, got me again.

Arshitha commented 1 year ago

@ericearl Great, thank you! I'll merge this to main and do some more testing with the main branch.