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nion-software / nionswift

Nion Swift is open source scientific image processing software integrating hardware control, data acquisition, visualization, processing, and analysis using Python. Nion Swift is easily extended using Python. It runs on Windows, Linux, and macOS.
http://nion.com/swift
GNU General Public License v3.0
44 stars 33 forks source link

Swift 16.10.0 crashes at start up on Mac OS #999

Closed kociak closed 2 months ago

kociak commented 8 months ago

I tried to update to Swift 16.10.0, it crashes at start up on Mac OS. I tried to create different environments I restarted my computer, updated conda ... and I consistently got the error below.

Former version (16.9.x) do work on my old environment.

Translated Report (Full Report Below)

Process: Nion Swift [3801] Path: /Users/USER/*/Nion Swift.app/Contents/MacOS/Nion Swift Identifier: com.nion.swift.launcher Version: () Code Type: X86-64 (Native) Parent Process: python3.12 [3793] Responsible: Terminal [898] User ID: 503

Date/Time: 2024-01-22 10:49:00.7649 +0100 OS Version: macOS 12.6.3 (21G419) Report Version: 12 Bridge OS Version: 7.2 (20P3045) Anonymous UUID: C9F33ED4-A947-DB38-1C7C-F1FA71E13384

Time Awake Since Boot: 950 seconds

System Integrity Protection: enabled

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_BAD_ACCESS (SIGKILL (Code Signature Invalid)) Exception Codes: UNKNOWN_0x32 at 0x000000010a29d000 Exception Codes: 0x0000000000000032, 0x000000010a29d000 Exception Note: EXC_CORPSE_NOTIFY

Termination Reason: Namespace CODESIGNING, Code 2

VM Region Info: 0x10a29d000 is in 0x10a29d000-0x10b3fe000; bytes after start: 0 bytes before end: 18223103 REGION TYPE START - END [ VSIZE] PRT/MAX SHRMOD REGION DETAIL __LINKEDIT 10a1e1000-10a29d000 [ 752K] r--/rwx SM=COW ...hon3.12.dylib ---> mapped file 10a29d000-10b3fe000 [ 17.4M] r--/rwx SM=COW ...t_id=69aeaedb GAP OF 0x7993000 BYTES __TEXT 112d91000-112dfd000 [ 432K] r-x/r-x SM=COW /usr/lib/dyld

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 dyld 0x112dc4601 dyld3::MachOFile::compatibleSlice(Diagnostics&, void const, unsigned long, char const, dyld3::Platform, bool, dyld3::GradedArchs const&) + 69 1 dyld 0x112daa771 invocation function for block in dyld4::JustInTimeLoader::makeJustInTimeLoaderDisk(Diagnostics&, dyld4::RuntimeState&, char const, dyld4::Loader::LoadOptions const&, bool, unsigned int) + 82 2 dyld 0x112daf80d dyld4::SyscallDelegate::withReadOnlyMappedFile(Diagnostics&, char const, bool, void (void const, unsigned long, bool, dyld4::FileID const&, char const) block_pointer) const + 137 3 dyld 0x112daa6f8 dyld4::JustInTimeLoader::makeJustInTimeLoaderDisk(Diagnostics&, dyld4::RuntimeState&, char const, dyld4::Loader::LoadOptions const&, bool, unsigned int) + 180 4 dyld 0x112da45bc invocation function for block in dyld4::Loader::getLoader(Diagnostics&, dyld4::RuntimeState&, char const, dyld4::Loader::LoadOptions const&) + 1557 5 dyld 0x112da49e2 invocation function for block in dyld4::Loader::forEachResolvedAtPathVar(dyld4::RuntimeState&, char const, dyld4::Loader::LoadOptions const&, dyld4::ProcessConfig::PathOverrides::Type, bool&, void (char const, dyld4::ProcessConfig::PathOverrides::Type, bool&) block_pointer) + 207 6 dyld 0x112d92db3 dyld3::MachOFile::forEachLoadCommand(Diagnostics&, void (load_command const, bool&) block_pointer) const + 129 7 dyld 0x112dccf14 dyld3::MachOAnalyzer::forEachRPath(void (char const, bool&) block_pointer) const + 92 8 dyld 0x112da39aa dyld4::Loader::forEachResolvedAtPathVar(dyld4::RuntimeState&, char const, dyld4::Loader::LoadOptions const&, dyld4::ProcessConfig::PathOverrides::Type, bool&, void (char const, dyld4::ProcessConfig::PathOverrides::Type, bool&) block_pointer) + 828 9 dyld 0x112da359e invocation function for block in dyld4::Loader::forEachPath(Diagnostics&, dyld4::RuntimeState&, char const, dyld4::Loader::LoadOptions const&, void (char const, dyld4::ProcessConfig::PathOverrides::Type, bool&) block_pointer) + 134 10 dyld 0x112d9ac87 dyld4::ProcessConfig::PathOverrides::forEachPathVariant(char const, dyld3::Platform, bool, bool&, void (char const, dyld4::ProcessConfig::PathOverrides::Type, bool&) block_pointer) const + 525 11 dyld 0x112da3500 dyld4::Loader::forEachPath(Diagnostics&, dyld4::RuntimeState&, char const, dyld4::Loader::LoadOptions const&, void (char const, dyld4::ProcessConfig::PathOverrides::Type, bool&) block_pointer) + 154 12 dyld 0x112da3d7a dyld4::Loader::getLoader(Diagnostics&, dyld4::RuntimeState&, char const, dyld4::Loader::LoadOptions const&) + 860 13 dyld 0x112da8b4f invocation function for block in dyld4::JustInTimeLoader::loadDependents(Diagnostics&, dyld4::RuntimeState&, dyld4::Loader::LoadOptions const&) + 427 14 dyld 0x112dc3524 invocation function for block in dyld3::MachOFile::forEachDependentDylib(void (char const, bool, bool, bool, unsigned int, unsigned int, bool&) block_pointer) const + 107 15 dyld 0x112d92db3 dyld3::MachOFile::forEachLoadCommand(Diagnostics&, void (load_command const, bool&) block_pointer) const + 129 16 dyld 0x112dc339c dyld3::MachOFile::forEachDependentDylib(void (char const, bool, bool, bool, unsigned int, unsigned int, bool&) block_pointer) const + 164 17 dyld 0x112da8886 dyld4::JustInTimeLoader::loadDependents(Diagnostics&, dyld4::RuntimeState&, dyld4::Loader::LoadOptions const&) + 152 18 dyld 0x112db519d invocation function for block in dyld4::APIs::dlopen_from(char const, int, void) + 479 19 dyld 0x112d9b719 dyld4::RuntimeState::withLoadersWriteLock(void () block_pointer) + 49 20 dyld 0x112db4dc6 dyld4::APIs::dlopen_from(char const, int, void) + 534 21 libpython3.12.dylib 0x109e3d895 _PyImport_LoadDynamicModuleWithSpec + 693 22 libpython3.12.dylib 0x109e3cbd7 _imp_create_dynamic + 167 23 libpython3.12.dylib 0x109cdda9a cfunction_vectorcall_FASTCALL + 106 24 libpython3.12.dylib 0x109deb2eb _PyEval_EvalFrameDefault + 244763 25 libpython3.12.dylib 0x109c6f619 _PyObject_VectorcallTstate.777 + 73 26 libpython3.12.dylib 0x109c747fe object_vacall + 414 27 libpython3.12.dylib 0x109c7460a PyObject_CallMethodObjArgs + 234 28 libpython3.12.dylib 0x109e3ab14 PyImport_ImportModuleLevelObject + 3492 29 libpython3.12.dylib 0x109da52ea builtin_import__ + 314 30 libpython3.12.dylib 0x109cdda02 cfunction_vectorcall_FASTCALL_KEYWORDS + 98 31 libpython3.12.dylib 0x109deb2eb _PyEval_EvalFrameDefault + 244763 32 libpython3.12.dylib 0x109c6f619 _PyObject_VectorcallTstate.777 + 73 33 libpython3.12.dylib 0x109c747fe object_vacall + 414 34 libpython3.12.dylib 0x109c7460a PyObject_CallMethodObjArgs + 234 35 libpython3.12.dylib 0x109e3a2b5 PyImport_ImportModuleLevelObject + 1349 36 libpython3.12.dylib 0x109ddb565 _PyEval_EvalFrameDefault + 179861 37 libpython3.12.dylib 0x109dac83d PyEval_EvalCode + 253 38 libpython3.12.dylib 0x109da7115 builtin_exec + 437 39 libpython3.12.dylib 0x109cdda02 cfunction_vectorcall_FASTCALL_KEYWORDS + 98 40 libpython3.12.dylib 0x109deb2eb _PyEval_EvalFrameDefault + 244763 41 libpython3.12.dylib 0x109c6f619 _PyObject_VectorcallTstate.777 + 73 42 libpython3.12.dylib 0x109c747fe object_vacall + 414 43 libpython3.12.dylib 0x109c7460a PyObject_CallMethodObjArgs + 234 44 libpython3.12.dylib 0x109e3ab14 PyImport_ImportModuleLevelObject + 3492 45 libpython3.12.dylib 0x109ddb565 _PyEval_EvalFrameDefault + 179861 46 libpython3.12.dylib 0x109dac83d PyEval_EvalCode + 253 47 libpython3.12.dylib 0x109da7115 builtin_exec + 437 48 libpython3.12.dylib 0x109cdda02 cfunction_vectorcall_FASTCALL_KEYWORDS + 98 49 libpython3.12.dylib 0x109deb2eb _PyEval_EvalFrameDefault + 244763 50 libpython3.12.dylib 0x109c6f619 _PyObject_VectorcallTstate.777 + 73 51 libpython3.12.dylib 0x109c747fe object_vacall + 414 52 libpython3.12.dylib 0x109c7460a PyObject_CallMethodObjArgs + 234 53 libpython3.12.dylib 0x109e3ab14 PyImportImportModuleLevelObject + 3492 54 libpython3.12.dylib 0x109da52ea builtinimport + 314 55 libpython3.12.dylib 0x109cdda02 cfunction_vectorcall_FASTCALL_KEYWORDS + 98 56 libpython3.12.dylib 0x109deb2eb _PyEval_EvalFrameDefault + 244763 57 libpython3.12.dylib 0x109c6f619 _PyObject_VectorcallTstate.777 + 73 58 libpython3.12.dylib 0x109c747fe object_vacall + 414 59 libpython3.12.dylib 0x109c7460a PyObject_CallMethodObjArgs + 234 60 libpython3.12.dylib 0x109e3a2b5 PyImport_ImportModuleLevelObject + 1349 61 libpython3.12.dylib 0x109ddb565 _PyEval_EvalFrameDefault + 179861 62 libpython3.12.dylib 0x109dac83d PyEval_EvalCode + 253 63 libpython3.12.dylib 0x109da7115 builtin_exec + 437 64 libpython3.12.dylib 0x109cdda02 cfunction_vectorcall_FASTCALL_KEYWORDS + 98 65 libpython3.12.dylib 0x109deb2eb _PyEval_EvalFrameDefault + 244763 66 libpython3.12.dylib 0x109c6f619 _PyObject_VectorcallTstate.777 + 73 67 libpython3.12.dylib 0x109c747fe object_vacall + 414 68 libpython3.12.dylib 0x109c7460a PyObject_CallMethodObjArgs + 234 69 libpython3.12.dylib 0x109e3ab14 PyImport_ImportModuleLevelObject + 3492 70 libpython3.12.dylib 0x109da52ea builtin_import + 314 71 libpython3.12.dylib 0x109cdda02 cfunction_vectorcall_FASTCALL_KEYWORDS + 98 72 libpython3.12.dylib 0x109deb2eb _PyEval_EvalFrameDefault + 244763 73 libpython3.12.dylib 0x109c6f619 _PyObject_VectorcallTstate.777 + 73 74 libpython3.12.dylib 0x109c747fe object_vacall + 414 75 libpython3.12.dylib 0x109c7460a PyObject_CallMethodObjArgs + 234 76 libpython3.12.dylib 0x109e3ab14 PyImportImportModuleLevelObject + 3492 77 libpython3.12.dylib 0x109da52ea builtinimport + 314 78 libpython3.12.dylib 0x109cdda02 cfunction_vectorcall_FASTCALL_KEYWORDS + 98 79 libpython3.12.dylib 0x109deb2eb _PyEval_EvalFrameDefault + 244763 80 libpython3.12.dylib 0x109c6f619 _PyObject_VectorcallTstate.777 + 73 81 libpython3.12.dylib 0x109c747fe object_vacall + 414 82 libpython3.12.dylib 0x109c7460a PyObject_CallMethodObjArgs + 234 83 libpython3.12.dylib 0x109e3ab14 PyImport_ImportModuleLevelObject + 3492 84 libpython3.12.dylib 0x109da52ea builtin_import + 314 85 libpython3.12.dylib 0x109cdda02 cfunction_vectorcall_FASTCALL_KEYWORDS + 98 86 libpython3.12.dylib 0x109c7362a _PyObject_CallFunctionVa + 170 87 libpython3.12.dylib 0x109c73561 PyObject_CallFunction + 161 88 libpython3.12.dylib 0x109e39508 PyImport_Import + 424 89 libpython3.12.dylib 0x109e3932c PyImport_ImportModule + 28 90 Nion Swift 0x1040a3151 DPyImport_ImportModule(char const*) + 65 91 Nion Swift 0x1040abfe4 0x103fc1000 + 962532 92 Nion Swift 0x1040a5b7d 0x103fc1000 + 936829 93 Nion Swift 0x1040a5964 PythonSupport::initialize(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&, std::1::list<std::__1::basic_string<char, std::1::char_traits, std::1::allocator >, std::1::allocator<std::1::basic_string<char, std::__1::char_traits, std::1::allocator > > > const&, std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) + 1332 94 Nion Swift 0x103fd5ad4 Application::initialize() + 8004 95 Nion Swift 0x1040a1800 main + 64 96 dyld 0x112d9652e start + 462

Thread 1: 0 libsystem_pthread.dylib 0x7ff81eb14f48 start_wqthread + 0

Thread 2: 0 libsystem_pthread.dylib 0x7ff81eb14f48 start_wqthread + 0

Thread 3: 0 libsystem_pthread.dylib 0x7ff81eb14f48 start_wqthread + 0

Thread 4: 0 libsystem_pthread.dylib 0x7ff81eb14f48 start_wqthread + 0

Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000001000000 rbx: 0x000000010a29d000 rcx: 0x00007ff7bbf37930 rdx: 0x00000000011609f0 rdi: 0x00007ff7bbf37370 rsi: 0x000000010a29d000 rbp: 0x00007ff7bbf36900 rsp: 0x00007ff7bbf36780 r8: 0x0000000000000001 r9: 0x0000000000000000 r10: 0x0000000112d951aa r11: 0x0000000000000246 r12: 0x00000000011609f0 r13: 0x0000000112dee244 r14: 0x00007ff7bbf37370 r15: 0x0000000000000000 rip: 0x0000000112dc4601 rfl: 0x0000000000010202 cr2: 0x000000010a29d000

Logical CPU: 7 Error Code: 0x00000004 (no mapping for user data read) Trap Number: 14

Thread 0 instruction stream: 48 0f 4d c1 41 f6 c7 40-48 0f 44 c1 48 09 d8 48 H.M.A..@H.D.H..H 83 c4 08 5b 41 5e 41 5f-5d c3 90 55 48 89 e5 41 ...[A^A_]..UH..A 57 41 56 41 55 41 54 53-48 81 ec 58 01 00 00 45 WAVAUATSH..X...E 89 cf 44 89 85 c8 fe ff-ff 48 89 8d c0 fe ff ff ..D......H...... 49 89 d4 48 89 f3 49 89-fe 4c 8b 6d 10 48 8d 05 I..H..I..L.m.H.. 9b cd 04 00 48 8b 00 48-89 45 d0 b8 00 00 00 01 ....H..H.E...... [0b]06 3d ca fe ba bf 75-40 48 8d 85 cf fe ff ff ..=....u@H...... <== 4c 8d 95 b0 fe ff ff 45-0f b6 c7 4c 8d 8d b8 fe L......E...L.... ff ff 48 89 df 4c 89 f6-4c 89 e2 4c 89 e9 50 41 ..H..L..L..L..PA 52 e8 91 e3 ff ff 48 83-c4 10 84 c0 0f 84 b4 00 R.....H......... 00 00 48 03 9d b8 fe ff-ff 8b 03 83 e0 fe 3d ce ..H...........=. fa ed fe 0f 85 85 00 00-00 48 89 df 4c 89 f6 4c .........H..L..L

Binary Images: 0x112d91000 - 0x112dfcfff dyld () <006a3e6f-3cd3-34d9-b0f2-ed6bd67a95a6> /usr/lib/dyld 0x109bf0000 - 0x10a010fff libpython3.12.dylib () <36af07f6-1bfc-3dbe-8229-c67a7b33391d> /Users/USER//libpython3.12.dylib 0x103fc1000 - 0x1040d0fff com.nion.swift.launcher () /Users/USER//Nion Swift.app/Contents/MacOS/Nion Swift 0x7ff81eb13000 - 0x7ff81eb1efff libsystem_pthread.dylib () /usr/lib/system/libsystem_pthread.dylib 0x0 - 0xffffffffffffffff ??? (*) <00000000-0000-0000-0000-000000000000> ???

External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0

VM Region Summary: ReadOnly portion of Libraries: Total=873.6M resident=0K(0%) swapped_out_or_unallocated=873.6M(100%) Writable regions: Total=598.8M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=598.8M(100%)

                            VIRTUAL   REGION

REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Activity Tracing 256K 1 ColorSync 212K 24 Kernel Alloc Once 8K 1 MALLOC 201.1M 33 MALLOC guard page 16K 4 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) ObjC additional data 15K 1 STACK GUARD 56.0M 5 Stack 10.0M 6 VM_ALLOCATE 2080K 7 CTF 756 1 DATA 19.2M 300 DATA_CONST 12.3M 175 __DATA_DIRTY 534K 97 FONT_DATA 4K 1 LINKEDIT 650.1M 19 TEXT 223.5M 313 __UNICODE 592K 1 dyld private memory 1024K 1 mapped file 76.4M 18 shared memory 768K 14 =========== ======= ======= TOTAL 1.6G 1024 TOTAL, minus reserved VM space 1.2G 1024

Full Report

{"app_name":"Nion Swift","timestamp":"2024-01-22 10:49:01.00 +0100","app_version":"","slice_uuid":"c21fdd27-e067-3d1f-8e84-0d0f4f35f16b","build_version":"","platform":1,"bundleID":"com.nion.swift.launcher","share_with_app_devs":1,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.6.3 (21G419)","incident_id":"31889113-72AC-45CC-9A1F-E8AA2D9D29D4","name":"Nion Swift"} { "uptime" : 950, "procLaunch" : "2024-01-22 10:48:55.9674 +0100", "procRole" : "Background", "version" : 2, "userID" : 503, "deployVersion" : 210, "modelCode" : "MacBookPro16,2", "procStartAbsTime" : 945439227654, "coalitionID" : 909, "osVersion" : { "train" : "macOS 12.6.3", "build" : "21G419", "releaseType" : "User" }, "captureTime" : "2024-01-22 10:49:00.7649 +0100", "incident" : "31889113-72AC-45CC-9A1F-E8AA2D9D29D4", "bug_type" : "309", "pid" : 3801, "procExitAbsTime" : 950235990978, "cpuType" : "X86-64", "procName" : "Nion Swift", "procPath" : "\/Users\/USER\/\/Nion Swift.app\/Contents\/MacOS\/Nion Swift", "bundleInfo" : {"CFBundleShortVersionString":"","CFBundleVersion":"","CFBundleIdentifier":"com.nion.swift.launcher"}, "storeInfo" : {"deviceIdentifierForVendor":"A146A4F3-147A-5091-BEAF-862F6ACD4B9F","thirdParty":true}, "parentProc" : "python3.12", "parentPid" : 3793, "coalitionName" : "com.apple.Terminal", "crashReporterKey" : "C9F33ED4-A947-DB38-1C7C-F1FA71E13384", "responsiblePid" : 898, "responsibleProc" : "Terminal", "bridgeVersion" : {"build":"20P3045","train":"7.2"}, "sip" : "enabled", "vmRegionInfo" : "0x10a29d000 is in 0x10a29d000-0x10b3fe000; bytes after start: 0 bytes before end: 18223103\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n LINKEDIT 10a1e1000-10a29d000 [ 752K] r--\/rwx SM=COW ...hon3.12.dylib\n---> mapped file 10a29d000-10b3fe000 [ 17.4M] r--\/rwx SM=COW ...t_id=69aeaedb\n GAP OF 0x7993000 BYTES\n __TEXT 112d91000-112dfd000 [ 432K] r-x\/r-x SM=COW \/usr\/lib\/dyld", "isCorpse" : 1, "exception" : {"codes":"0x0000000000000032, 0x000000010a29d000","rawCodes":[50,4465479680],"type":"EXC_BAD_ACCESS","signal":"SIGKILL (Code Signature Invalid)","subtype":"UNKNOWN_0x32 at 0x000000010a29d000"}, "termination" : {"namespace":"CODESIGNING","flags":0,"code":2}, "vmregioninfo" : "0x10a29d000 is in 0x10a29d000-0x10b3fe000; bytes after start: 0 bytes before end: 18223103\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n LINKEDIT 10a1e1000-10a29d000 [ 752K] r--\/rwx SM=COW ...hon3.12.dylib\n---> mapped file 10a29d000-10b3fe000 [ 17.4M] r--\/rwx SM=COW ...t_id=69aeaedb\n GAP OF 0x7993000 BYTES\n TEXT 112d91000-112dfd000 [ 432K] r-x\/r-x SM=COW \/usr\/lib\/dyld", "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0}, "faultingThread" : 0, "threads" : [{"triggered":true,"id":35626,"instructionState":{"instructionStream":{"bytes":[72,15,77,193,65,246,199,64,72,15,68,193,72,9,216,72,131,196,8,91,65,94,65,95,93,195,144,85,72,137,229,65,87,65,86,65,85,65,84,83,72,129,236,88,1,0,0,69,137,207,68,137,133,200,254,255,255,72,137,141,192,254,255,255,73,137,212,72,137,243,73,137,254,76,139,109,16,72,141,5,155,205,4,0,72,139,0,72,137,69,208,184,0,0,0,1,11,6,61,202,254,186,191,117,64,72,141,133,207,254,255,255,76,141,149,176,254,255,255,69,15,182,199,76,141,141,184,254,255,255,72,137,223,76,137,246,76,137,226,76,137,233,80,65,82,232,145,227,255,255,72,131,196,16,132,192,15,132,180,0,0,0,72,3,157,184,254,255,255,139,3,131,224,254,61,206,250,237,254,15,133,133,0,0,0,72,137,223,76,137,246,76],"offset":96}},"threadState":{"r13":{"value":4611564100,"symbolLocation":0,"symbol":"dyld3::GradedArchs::x86_64h"},"rax":{"value":16777216},"rflags":{"value":66050},"cpu":{"value":7},"r14":{"value":140701986943856},"rsi":{"value":4465479680},"r8":{"value":1},"cr2":{"value":4465479680},"rdx":{"value":18221552},"r10":{"value":4611199402,"symbolLocation":10,"symbol":"fcntl"},"r9":{"value":0},"r15":{"value":0},"rbx":{"value":4465479680},"trap":{"value":14,"description":"(no mapping for user data read)"},"err":{"value":4},"r11":{"value":582},"rip":{"value":4611393025,"matchesCrashFrame":1},"rbp":{"value":140701986941184},"rsp":{"value":140701986940800},"r12":{"value":18221552},"rcx":{"value":140701986945328},"flavor":"x86_THREAD_STATE","rdi":{"value":140701986943856}},"queue":"com.apple.main-thread","frames":[{"imageOffset":210433,"symbol":"dyld3::MachOFile::compatibleSlice(Diagnostics&, void const, unsigned long, char const, dyld3::Platform, bool, dyld3::GradedArchs const&)","symbolLocation":69,"imageIndex":0},{"imageOffset":104305,"symbol":"invocation function for block in dyld4::JustInTimeLoader::makeJustInTimeLoaderDisk(Diagnostics&, dyld4::RuntimeState&, char const, dyld4::Loader::LoadOptions const&, bool, unsigned int)","symbolLocation":82,"imageIndex":0},{"imageOffset":124941,"symbol":"dyld4::SyscallDelegate::withReadOnlyMappedFile(Diagnostics&, char const, bool, void (void const, unsigned long, bool, dyld4::FileID const&, char const) block_pointer) 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TomaSusi commented 8 months ago

On my arm64 M2 MacBook Air, I can actually install 16.10 from conda-forge and launch it without an issue. However, trying to use "Open Project" which would launch a Finder window does crash Swift:

Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000010 Exception Codes: 0x0000000000000001, 0x0000000000000010

Termination Reason: Namespace SIGNAL, Code 11 Segmentation fault: 11 Terminating Process: exc handler [85188]

When I try launch Swift with Alt + click to select a project folder upon launch, it crashes like this immediately.

I also tried to install 16.9 or 16.10 in a macOS arm64 native conda environment, and I get a similar "Exception Type: EXC_BAD_ACCESS (SIGKILL (Code Signature Invalid))" error.

Below is the full stack trace for Swift installed with condaforge using create -n nionswift-arm64 -c conda-forge nionswift nionswift-tool

Translated Report (Full Report Below)

Incident Identifier: 267666BA-5865-4F9F-9A76-C96DCC1049A9 CrashReporter Key: DC30AEB1-327D-63BA-C4F9-9DBDC2B31C8A Hardware Model: Mac14,15 Process: Nion Swift [84147] Path: /Users/USER/*/Nion Swift.app/Contents/MacOS/Nion Swift Identifier: com.nion.swift.launcher Version: () Code Type: ARM-64 (Native) Role: Unspecified Parent Process: python3.12 [84146] Coalition: com.apple.Terminal [1102] Responsible Process: Terminal [1840]

Date/Time: 2024-01-22 15:09:47.1252 +0100 Launch Time: 2024-01-22 15:09:46.1215 +0100 OS Version: macOS 14.2.1 (23C71) Release Type: User Report Version: 104

Exception Type: EXC_BAD_ACCESS (SIGKILL (Code Signature Invalid)) Exception Subtype: UNKNOWN_0x32 at 0x0000000100800000 Exception Codes: 0x0000000000000032, 0x0000000100800000 VM Region Info: 0x100800000 is in 0x100800000-0x100884000; bytes after start: 0 bytes before end: 540671 REGION TYPE START - END [ VSIZE] PRT/MAX SHRMOD REGION DETAIL UNUSED SPACE AT START ---> TEXT 100800000-100884000 [ 528K] r-x/r-x SM=COW
DATA_CONST 100884000-100888000 [ 16K] rw-/rw- SM=COW
Termination Reason: CODESIGNING 2 Invalid Page

Triggered by Thread: 0

Thread 0 Crashed: 0 0x1009ca204 dyld3::MachOFile::forEachLoadCommand(Diagnostics&, void (load_command const*, bool&) block_pointer) const + 52 1 0x1009cc2ac dyld3::MachOFile::forEachSupportedPlatform(void (dyld3::Platform, unsigned int, unsigned int) block_pointer) const + 160 2 0x100a222e4 dyld3::MachOFile::isBuiltForSimulator() const + 124 3 0x1009cdb88 start + 992

Thread 0 crashed with ARM Thread State (64-bit): x0: 0x0000000100800000 x1: 0x000000016f5ff278 x2: 0x000000016f5ff220 x3: 0x00000001009c9e44 x4: 0x0000000000000070 x5: 0x0000000000000073 x6: 0x0000000000000000 x7: 0x0000000000000ce0 x8: 0x000000016f5ff258 x9: 0x0000000100a635f8 x10: 0x0000000100a4b000 x11: 0x0000000100a5876f x12: 0x0000000000000065 x13: 0x0000000000000073 x14: 0x0000000000058a70 x15: 0x0000000000000000 x16: 0x00000001009cc34c x17: 0x6ae100016f5ff220 x18: 0x0000000000000000 x19: 0x000000016f5ff278 x20: 0x0000000100800000 x21: 0x000000016f5ff220 x22: 0x00000001009c8000 x23: 0x000000016f5ff3d8 x24: 0x000000016f5ff3b0 x25: 0x0000000000000000 x26: 0x0000000000000000 x27: 0x0000000000000000 x28: 0x0000000000000000 fp: 0x000000016f5ff210 lr: 0xbb3c0001009cc2ac sp: 0x000000016f5ff180 pc: 0x00000001009ca204 cpsr: 0x80001000 far: 0x0000000100800000 esr: 0x92000007 (Data Abort) byte read Translation fault

Binary Images: 0x1009c8000 - 0x100a5ffff () <324e4ad9-e01f-3183-b09f-3e20b326643a> ??? 0x100800000 - 0x100883fff () <7f95bf36-6ffe-332b-85d0-e439fe20e222> ??? 0x0 - 0xffffffffffffffff ??? (*) <00000000-0000-0000-0000-000000000000> ???

Error Formulating Crash Report: dyld_process_snapshot_get_shared_cache failed

EOF

Full Report

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], "experiments" : [

] }, "reportNotes" : [ "dyld_process_snapshot_get_shared_cache failed" ] }

cmeyer commented 8 months ago

@kociak Are you installing on an M1 mac or an older Mac? If M1, can you try installing the arm64 version? Running the x86 version on arm64 processors is a known (unresolved) issue.

@TomaSusi @kociak - Can you both try downloading the packaged version of Swift and seeing if that works on your machine? https://nion.com/swift/downloads I will also try to duplicate the open project crash on my machine.

cmeyer commented 8 months ago

@TomaSusi I reproduced the open project bug. I'll fix that and do another release as soon as possible. There is no need for further testing on your part.

kociak commented 8 months ago

@cmeyer. Running an old (Intel Core i5) processor, so can't install the arm64 version. Just installed the packaged version (did not know about its existence!); just works like a charm on my installation.

cmeyer commented 8 months ago

@TomaSusi the new release 0.4.23 should fix the open dialog problem. Be sure to also update nionui to 7.0.3.

cmeyer commented 8 months ago

@kociak I could not reproduce the code signing problem you described. I installed a new version of macOS, installed miniconda, and used a command similar to this to install Swift:

conda create -n nionswift_16_10 -c nion -c conda-forge nionswift nionswift-tool -y
conda activate nionswift_16_10
nionswift

If you still want to pursue this issue, can you (a) try the commands above; (b) use conda list and paste here to show me your conda environment. If you're satisfied with the packaged download, you can just close this issue. Thanks!

kociak commented 8 months ago

@kociak I could not reproduce the code signing problem you described. I installed a new version of macOS, installed miniconda, and used a command similar to this to install Swift:

conda create -n nionswift_16_10 -c nion -c conda-forge nionswift nionswift-tool -y
conda activate nionswift_16_10
nionswift

very strange. Using conda-forge in place of conda made it - no need to change OS, reinstall conda or anything else. I never used conda-forge, maybe there is a subtlety I am not aware off - just using the conda install recommended on the website. In any case, seems to solve my problem. Are you recommending to install with conda-forge in general?

If you still want to pursue this issue, can you (a) try the commands above; (b) use conda list and paste here to show me your conda environment. If you're satisfied with the packaged download, you can just close this issue. Thanks!

as a note, I can't be personnally satisfied by the packaged download. To be honest, this is really great you have made it, will help spread nionswift accross our platform users. Excellent! But my main use of nionswift on my laptop is plug-in coding, and I understanding the external plug ins are not possible (I guess you have some sort of frozen environment there). Btw, having the possibility to add plug in to the packaged version would also be great for our users, as we have some tools implemented in the form of plug ins that they may want (example: calibration helper for cathodoluminescence data ...)

TomaSusi commented 8 months ago

@TomaSusi the new release 0.4.23 should fix the open dialog problem. Be sure to also update nionui to 7.0.3.

Thanks, confirmed this works!

cmeyer commented 2 months ago

Please try Swift 16.11 and reopen if the failure still occurs.