search

nipreps / dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
https://www.nipreps.org/dmriprep
Apache License 2.0
64 stars 24 forks source link

ENH: Port the new *anatomical fast-track* from *fMRIPrep* #109

Closed oesteban closed 4 years ago

oesteban commented 4 years ago

Uses poldracklab/smriprep#107 to skip precalculated anatomical derivatives, just setting the --anat-derivatives <path> command line argument.

pull-assistant[bot] commented 4 years ago
Score: 0.96

Best reviewed: commit by commit

Optimal code review plan

     ENH: Port the new *anatomical fast-track* from *fMRIPrep*      fix(circleci): do not let the docker daemon to create bound folders      Apply suggestions from code review [skip ci]

Powered by Pull Assistant. Last update 7890f64 ... 347b40e. Read the comment docs.

codecov[bot] commented 4 years ago

Codecov Report

Merging #109 into master will decrease coverage by 0.13%. The diff coverage is 28.57%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #109      +/-   ##
==========================================
- Coverage   52.01%   51.88%   -0.14%     
==========================================
  Files          20       20              
  Lines        1215     1222       +7     
  Branches      160      161       +1     
==========================================
+ Hits          632      634       +2     
- Misses        571      576       +5     
  Partials       12       12
Impacted Files Coverage Δ
dmriprep/cli/run.py 4.10% <ø> (ø)
dmriprep/workflows/base.py 22.89% <0.00%> (-1.47%) :arrow_down:
dmriprep/cli/parser.py 56.86% <100.00%> (+0.28%) :arrow_up:
dmriprep/config/__init__.py 57.08% <100.00%> (+0.17%) :arrow_up:

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 634d89a...347b40e. Read the comment docs.