FIX: Output eddy parameter files to work dir instead of input dir

nipreps / dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

https://www.nipreps.org/dmriprep

Apache License 2.0

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FIX: Output eddy parameter files to work dir instead of input dir #175

Closed josephmje closed 2 years ago

josephmje commented 2 years ago

If re-running the pipeline, BIDS validation fails because the index and acquisition parameter files are not BIDS-valid.