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nipreps / dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
https://www.nipreps.org/dmriprep
Apache License 2.0
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No dwi derivatives in output directory #200

Closed maryjis closed 1 month ago

maryjis commented 1 year ago

What happened?

dmriprep version: dMRIPrep v0.5.0+30.g510ed0ea Python version: Python 3.7.1 Operating System: Docker I run the following commands: git clone https://github.com/nipy/dmriprep, cd dmriprep, make docker Description With the latest docker image, run gets completed with no errors. But no output dwi directory gets created and only brain mask and bo reference.

Only anat, fmap and figures are in dmriprep output directory.

What command did you use?

docker run -ti -v "$PWD/COBRE_BIDS_test:/inputs" -v "$PWD/COBRE_dmri_preproc_test_fs:/outputs"  nipreps/dmriprep:latest dmriprep /inputs /outputs participant --skip-bids-validation --fs-no-reconall.

What version of the software are you running?

dMRIPrep v0.5.0+30.g510ed0ea

How are you running this software?

Docker

Is your data BIDS valid?

No

Are you reusing any previously computed results?

No

Please copy and paste any relevant log output.

No response

Additional information / screenshots

No response

oesteban commented 1 month ago

I was recently referred to this issue in a private email. The bad news is that dMRIPrep is currently in a stale state. The good news is that we plan to revamp the development soon.

Please keep an eye on the development and upcoming new releases.