Possible L-R flip in ds000229 sub-07

nipreps / fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

https://fmriprep.org

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Possible L-R flip in ds000229 sub-07 #2282

Open effigies opened 3 years ago

effigies commented 3 years ago

What version of fMRIPrep are you using?

20.2.0rc0

What kind of installation are you using? Containers (Singularity, Docker), or "bare-metal"?

TACC run

Did fMRIPrep generate the visual report for this particular subject? If yes, could you share it?

Details

BBR alignment shows good overall fit, but the gray/white boundary seems off. z=17 in particular looks like a possible L-R flip.

This may be a problem in the dataset, not fMRIPrep's handling.

oesteban commented 3 years ago

Candidate for exercising https://doi.org/10.3389/fninf.2020.00018

effigies commented 3 years ago

Doesn't look like there's a standalone tool in AFNI for this, but it seems to be mostly implemented here.