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nipreps / fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
https://fmriprep.org
Apache License 2.0
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Ensure qform/sform copy doesn't modify zooms (or warn if it does) #2284

Open effigies opened 3 years ago

effigies commented 3 years ago

What version of fMRIPrep are you using?

20.2.0rc0

What kind of installation are you using? Containers (Singularity, Docker), or "bare-metal"?

TACC Run

ds000229 - sub-07

Did fMRIPrep generate the visual report for this particular subject? If yes, could you share it?

Screen Shot 2020-09-24 at 09 09 18

Details

BOLD looks significantly larger than T1w, and sform was copied to qform. This has the potential to change pixdim, since qform is built from quaternions, offsets and pixdim.

This is a note to verify, but probably shouldn't block.

oesteban commented 3 years ago

This particular instance could be a visual effect of #2282.