Open jbwexler opened 3 years ago
@effigies
Are you running multiple jobs in parallel? This looks like 2 conflicting templateflow update calls.
Can you clear your templateflow cache (/scratch1/03201/jbwexler/openneuro_derivatives_tests/derivatives/fmriprep/ds001734-fmriprep/code/containers/binds/HOME/.cache/templateflow/
) and retry with a single job?
Yes, it's a race, but we should be resilient to those. For fMRIPrep, we should check again that we're prefetching all default templates. For templateflow we should catch the error and validate the newly found file.
What version of fMRIPrep are you using?
20.2.3
What kind of installation are you using? Containers (Singularity, Docker), or "bare-metal"?
Singularity
What is the exact command-line you used?
Have you checked that your inputs are BIDS valid?
Yes
Did fMRIPrep generate the visual report for this particular subject? If yes, could you share it?
no
Can you find some traces of the error reported in the visual report (at the bottom) or in crashfiles?
Are you reusing previously computed results (e.g., FreeSurfer, Anatomical derivatives, work directory of previous run)?
no
fMRIPrep log
If you have access to the output logged by fMRIPrep, please make sure to attach it as a text file to this issue.
Note: I linked to this issue on the template flow github: https://github.com/templateflow/templateflow/issues/93