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nipreps / fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
https://fmriprep.org
Apache License 2.0
634 stars 293 forks source link

Freesurfer 7.2? #2798

Closed hoptman closed 2 years ago

hoptman commented 2 years ago

What would you like to see added in fMRIPrep?

Hi all, Is there any way to force fMRIPrep to use freesurfer 7.2? I'm using fmriprep-docker, so I'm thinking that 7.2 is not yet in the container. Is there a plan to incorporate 7.2 in a forthcoming version? I find that it performs better than 6.0, and it includes parcellations for hippocampal and amygdala subfields. Thanks, Matt

Do you have any interest in helping implement the feature?

No

Additional information / screenshots

No response

effigies commented 2 years ago

FreeSurfer 7.2 is bundled with fMRIPrep 22.0.0, which is in release-candidate phase. If you're using fmriprep-docker upgrade with pip install --upgrade --pre fmriprep-docker.

hoptman commented 2 years ago

Thanks!!